miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25869 5' -62.7 NC_005337.1 + 10668 0.66 0.590285
Target:  5'- cGCGCGCcGGccGGCgGCgGguucuccucgaaGGCGGCCa -3'
miRNA:   3'- -UGUGCGaCCa-CCGgCGgU------------UCGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 46462 0.66 0.590285
Target:  5'- gACGCGUgcgacuuccuggUGGUgugGGUgGCCcgcGCGGCCGa -3'
miRNA:   3'- -UGUGCG------------ACCA---CCGgCGGuu-CGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 133724 0.66 0.589298
Target:  5'- uACGCGCggcGGUGGCggaguggCGCC-GGCaGCUGg -3'
miRNA:   3'- -UGUGCGa--CCACCG-------GCGGuUCGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 133724 0.66 0.589298
Target:  5'- uACGCGCggcGGUGGCggaguggCGCC-GGCaGCUGg -3'
miRNA:   3'- -UGUGCGa--CCACCG-------GCGGuUCGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 65753 0.66 0.589298
Target:  5'- gGCACGCUcagagccgagcgcGGgcgcacccacGGCCGCCAGcagcGCGGCg- -3'
miRNA:   3'- -UGUGCGA-------------CCa---------CCGGCGGUU----CGCCGgc -5'
25869 5' -62.7 NC_005337.1 + 127873 0.66 0.589298
Target:  5'- uGCACaGuCUGGUGGCgCGCggcgccggCGAGCgcgugcgGGCCGa -3'
miRNA:   3'- -UGUG-C-GACCACCG-GCG--------GUUCG-------CCGGC- -5'
25869 5' -62.7 NC_005337.1 + 47883 0.66 0.580436
Target:  5'- gACGCGCgca--GCCGCCuGGCGGCa- -3'
miRNA:   3'- -UGUGCGaccacCGGCGGuUCGCCGgc -5'
25869 5' -62.7 NC_005337.1 + 996 0.66 0.580436
Target:  5'- cGCGCGgaGGgcgGGCguCGCCuGGaGGCCGu -3'
miRNA:   3'- -UGUGCgaCCa--CCG--GCGGuUCgCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 996 0.66 0.580436
Target:  5'- cGCGCGgaGGgcgGGCguCGCCuGGaGGCCGu -3'
miRNA:   3'- -UGUGCgaCCa--CCG--GCGGuUCgCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 132408 0.66 0.580436
Target:  5'- -aGCGCUGGUGaacaGCgGaCAcGCGGCCa -3'
miRNA:   3'- ugUGCGACCAC----CGgCgGUuCGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 69709 0.66 0.570621
Target:  5'- gAC-UGUcGGUGGCgGCCAcGCGGUCc -3'
miRNA:   3'- -UGuGCGaCCACCGgCGGUuCGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 82135 0.66 0.570621
Target:  5'- uACACGUaGGaguUGGCgGCgCAcacgguGGCGGCCa -3'
miRNA:   3'- -UGUGCGaCC---ACCGgCG-GU------UCGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 130736 0.66 0.570621
Target:  5'- -aGCGCUcGUGGCCGCUggGU--CCGa -3'
miRNA:   3'- ugUGCGAcCACCGGCGGuuCGccGGC- -5'
25869 5' -62.7 NC_005337.1 + 130892 0.66 0.570621
Target:  5'- cACGcCGCUGcaccucaUGGCCGCgcacaccuccugCAAGCGGUCGc -3'
miRNA:   3'- -UGU-GCGACc------ACCGGCG------------GUUCGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 105204 0.66 0.570621
Target:  5'- cCGCGgcCUGGgGGCCGCUGAGCuGCgCGc -3'
miRNA:   3'- uGUGC--GACCaCCGGCGGUUCGcCG-GC- -5'
25869 5' -62.7 NC_005337.1 + 85641 0.66 0.570621
Target:  5'- uGCGCGCUGGcGuCCGCCGAGCa---- -3'
miRNA:   3'- -UGUGCGACCaCcGGCGGUUCGccggc -5'
25869 5' -62.7 NC_005337.1 + 11469 0.66 0.567684
Target:  5'- cGCACGCUGcGgucgaUGGCCGCgcgcagCAAcgcguccaugauccGCGGCCa -3'
miRNA:   3'- -UGUGCGAC-C-----ACCGGCG------GUU--------------CGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 63402 0.66 0.560847
Target:  5'- aGCGCGCUGGacaUGGCgCGCuCGuacAGCGcGCgGu -3'
miRNA:   3'- -UGUGCGACC---ACCG-GCG-GU---UCGC-CGgC- -5'
25869 5' -62.7 NC_005337.1 + 18322 0.66 0.560847
Target:  5'- aGCGCGUccauggccaucUGGUGGuCCGagcaCGGGCccguGGCCGa -3'
miRNA:   3'- -UGUGCG-----------ACCACC-GGCg---GUUCG----CCGGC- -5'
25869 5' -62.7 NC_005337.1 + 82091 0.66 0.560847
Target:  5'- -gACGC-GGUcGGCCGUCu-GCGcGCCGu -3'
miRNA:   3'- ugUGCGaCCA-CCGGCGGuuCGC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.