miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25869 5' -62.7 NC_005337.1 + 81674 0.7 0.334291
Target:  5'- uGCAugUGCUGGcucugcuUGGCCGCCAGcGCcGCCGc -3'
miRNA:   3'- -UGU--GCGACC-------ACCGGCGGUU-CGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 91289 0.71 0.313587
Target:  5'- aGCugGCucugguagaagaUGGacGCCGCCAGGCuGGCCa -3'
miRNA:   3'- -UGugCG------------ACCacCGGCGGUUCG-CCGGc -5'
25869 5' -62.7 NC_005337.1 + 74916 0.7 0.320615
Target:  5'- gGCGCgGCUGGcGGCCuucGCgCGcGCGGCCGc -3'
miRNA:   3'- -UGUG-CGACCaCCGG---CG-GUuCGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 51763 0.7 0.320615
Target:  5'- -gGCGCUGGacGGCCGCCccGUGGCg- -3'
miRNA:   3'- ugUGCGACCa-CCGGCGGuuCGCCGgc -5'
25869 5' -62.7 NC_005337.1 + 125402 0.7 0.32776
Target:  5'- gACACGCUGcGU-GCCGUCAugcacGGCGGCg- -3'
miRNA:   3'- -UGUGCGAC-CAcCGGCGGU-----UCGCCGgc -5'
25869 5' -62.7 NC_005337.1 + 16035 0.7 0.32776
Target:  5'- cACGCGCUGcGgcgccuGCCGCCGcGCgGGCCGc -3'
miRNA:   3'- -UGUGCGAC-Cac----CGGCGGUuCG-CCGGC- -5'
25869 5' -62.7 NC_005337.1 + 83918 0.7 0.32776
Target:  5'- gGCGCcuGCUGGcccaGGCUcgGCCGGGCGGCgGg -3'
miRNA:   3'- -UGUG--CGACCa---CCGG--CGGUUCGCCGgC- -5'
25869 5' -62.7 NC_005337.1 + 97855 0.7 0.32776
Target:  5'- gACGCGCUggcGGUGGCCGCCGccguGCucaaccgcauGGUCa -3'
miRNA:   3'- -UGUGCGA---CCACCGGCGGUu---CG----------CCGGc -5'
25869 5' -62.7 NC_005337.1 + 44200 0.7 0.32776
Target:  5'- cGCGCGCaaUGcGUcuGGCCGCCGcggAGCGGgCGa -3'
miRNA:   3'- -UGUGCG--AC-CA--CCGGCGGU---UCGCCgGC- -5'
25869 5' -62.7 NC_005337.1 + 23099 0.71 0.289256
Target:  5'- uGCGCGC-GGUGGucagcaacuucaaccCCGCCGuggucGCGGCCa -3'
miRNA:   3'- -UGUGCGaCCACC---------------GGCGGUu----CGCCGGc -5'
25869 5' -62.7 NC_005337.1 + 48324 0.71 0.280202
Target:  5'- gGCGCGCUGacgGGCaugaGCCGGGC-GCCGg -3'
miRNA:   3'- -UGUGCGACca-CCGg---CGGUUCGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 67545 0.72 0.261562
Target:  5'- aACGCGCUGGaggagaUGGaCCGCaCGGacGUGGCCGa -3'
miRNA:   3'- -UGUGCGACC------ACC-GGCG-GUU--CGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 30281 0.77 0.123101
Target:  5'- gGCGCGCaGGUGaG-CGCCAGGaCGGCCGg -3'
miRNA:   3'- -UGUGCGaCCAC-CgGCGGUUC-GCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 65121 0.74 0.192253
Target:  5'- aGC-UGCUGGUcgcacuGGCCGCgaAGGCGGCCGc -3'
miRNA:   3'- -UGuGCGACCA------CCGGCGg-UUCGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 105258 0.74 0.20176
Target:  5'- cCACgGCuUGG-GGCCGCCGuggcugacccugGGCGGCCGc -3'
miRNA:   3'- uGUG-CG-ACCaCCGGCGGU------------UCGCCGGC- -5'
25869 5' -62.7 NC_005337.1 + 57645 0.73 0.222
Target:  5'- uCAUGCUGGU-GCUGCCGGGC-GCCGc -3'
miRNA:   3'- uGUGCGACCAcCGGCGGUUCGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 88533 0.73 0.229483
Target:  5'- aACGUGCUGGUGGCgccguacauccucauCGCCAcgcuGGCGGgCCGg -3'
miRNA:   3'- -UGUGCGACCACCG---------------GCGGU----UCGCC-GGC- -5'
25869 5' -62.7 NC_005337.1 + 75997 0.73 0.232755
Target:  5'- -gGCGaaGGUGGCCGCCGuGC-GCCGg -3'
miRNA:   3'- ugUGCgaCCACCGGCGGUuCGcCGGC- -5'
25869 5' -62.7 NC_005337.1 + 38478 0.72 0.243944
Target:  5'- uGCGCGCcGGgcgcgcGcGUCGCCGAGCuGGCCGa -3'
miRNA:   3'- -UGUGCGaCCa-----C-CGGCGGUUCG-CCGGC- -5'
25869 5' -62.7 NC_005337.1 + 1832 0.72 0.255577
Target:  5'- aACACGUUGGUGGCgaggggguCGCagccGCGGCUGa -3'
miRNA:   3'- -UGUGCGACCACCG--------GCGguu-CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.