miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25871 3' -53.1 NC_005337.1 + 107697 0.66 0.949231
Target:  5'- gCUCccccgGCGACGucgucacGCUGUCCUUCGgCAAg -3'
miRNA:   3'- -GAGa----UGCUGUu------CGACGGGAAGUgGUU- -5'
25871 3' -53.1 NC_005337.1 + 33371 0.66 0.949231
Target:  5'- gCUC-ACGACGGGCgacaGaCCCUgCACCGg -3'
miRNA:   3'- -GAGaUGCUGUUCGa---C-GGGAaGUGGUu -5'
25871 3' -53.1 NC_005337.1 + 95794 0.66 0.944692
Target:  5'- gCUCgGCGACGcGCgGCCCggcgcgCACCGc -3'
miRNA:   3'- -GAGaUGCUGUuCGaCGGGaa----GUGGUu -5'
25871 3' -53.1 NC_005337.1 + 52935 0.66 0.944692
Target:  5'- -cCUGCGGCAAggagauGCUccaGCCCUUCGCg-- -3'
miRNA:   3'- gaGAUGCUGUU------CGA---CGGGAAGUGguu -5'
25871 3' -53.1 NC_005337.1 + 70048 0.66 0.939896
Target:  5'- -cCUACGugGAGCUcUCCgaCACCAGc -3'
miRNA:   3'- gaGAUGCugUUCGAcGGGaaGUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 104571 0.66 0.934839
Target:  5'- gCUCUACGACcccGAGaCggacgaGCCCUUCGCg-- -3'
miRNA:   3'- -GAGAUGCUG---UUC-Ga-----CGGGAAGUGguu -5'
25871 3' -53.1 NC_005337.1 + 101863 0.66 0.934839
Target:  5'- -gCUACGAgGcGCUGgucaCCUUCACCGu -3'
miRNA:   3'- gaGAUGCUgUuCGACg---GGAAGUGGUu -5'
25871 3' -53.1 NC_005337.1 + 3802 0.67 0.92952
Target:  5'- aUCgGCGACGGGCaccuUGCUCagCACCAGg -3'
miRNA:   3'- gAGaUGCUGUUCG----ACGGGaaGUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 102351 0.67 0.92394
Target:  5'- -cCUG-GugGAGCUGCaaagcgCCUUCGCCGAg -3'
miRNA:   3'- gaGAUgCugUUCGACG------GGAAGUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 81796 0.67 0.918097
Target:  5'- gCUCgcCGACGAGCagcuucagcugGCCCUgCGCCGGg -3'
miRNA:   3'- -GAGauGCUGUUCGa----------CGGGAaGUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 114821 0.67 0.911992
Target:  5'- gCUCUGCGACAcgAGCU-CCCUggugcaggagaUCACgAAg -3'
miRNA:   3'- -GAGAUGCUGU--UCGAcGGGA-----------AGUGgUU- -5'
25871 3' -53.1 NC_005337.1 + 120499 0.67 0.899005
Target:  5'- -gCUACGACcuGGC-GCCCcUCGCCGc -3'
miRNA:   3'- gaGAUGCUGu-UCGaCGGGaAGUGGUu -5'
25871 3' -53.1 NC_005337.1 + 64722 0.68 0.892128
Target:  5'- cCUCcGCGcCGAGCaGCCCgcgCGCCGGu -3'
miRNA:   3'- -GAGaUGCuGUUCGaCGGGaa-GUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 71626 0.68 0.885001
Target:  5'- ---gACGACAuccGcCUGCUCUUCGCCAc -3'
miRNA:   3'- gagaUGCUGUu--C-GACGGGAAGUGGUu -5'
25871 3' -53.1 NC_005337.1 + 120645 0.68 0.885001
Target:  5'- -cCUGCuuccaGACGAGgUGCUCUUCACCc- -3'
miRNA:   3'- gaGAUG-----CUGUUCgACGGGAAGUGGuu -5'
25871 3' -53.1 NC_005337.1 + 113316 0.68 0.885001
Target:  5'- gUCcgcCGACGAGCcGCCCUUgAUCAAa -3'
miRNA:   3'- gAGau-GCUGUUCGaCGGGAAgUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 79534 0.68 0.870016
Target:  5'- uUCUugGACAucauGCgGUCCUUCAUCu- -3'
miRNA:   3'- gAGAugCUGUu---CGaCGGGAAGUGGuu -5'
25871 3' -53.1 NC_005337.1 + 86526 0.68 0.862169
Target:  5'- ---cGCGGCGGGC-GCCCUUCucCCAGu -3'
miRNA:   3'- gagaUGCUGUUCGaCGGGAAGu-GGUU- -5'
25871 3' -53.1 NC_005337.1 + 12186 0.68 0.862169
Target:  5'- ---cGCGACGAGCUGgUCgagCACCGAg -3'
miRNA:   3'- gagaUGCUGUUCGACgGGaa-GUGGUU- -5'
25871 3' -53.1 NC_005337.1 + 29620 0.69 0.854093
Target:  5'- -cCUugGGCAcGC-GCCCUUCGCUg- -3'
miRNA:   3'- gaGAugCUGUuCGaCGGGAAGUGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.