miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25871 5' -59.2 NC_005337.1 + 100303 0.66 0.777345
Target:  5'- uCCUgGGCUGCGucccccGCGAG-UCCUCGCUc -3'
miRNA:   3'- uGGA-CCGGUGCc-----CGCUCaAGGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 25185 0.66 0.777345
Target:  5'- cCCUGGCCuCGGccGCGGccauGUUCgUCGCg -3'
miRNA:   3'- uGGACCGGuGCC--CGCU----CAAGgAGUGg -5'
25871 5' -59.2 NC_005337.1 + 2033 0.66 0.777345
Target:  5'- cUUUGGCCAC-GGCGAuccggUCCUC-CCu -3'
miRNA:   3'- uGGACCGGUGcCCGCUca---AGGAGuGG- -5'
25871 5' -59.2 NC_005337.1 + 47456 0.66 0.777345
Target:  5'- gACCga-CCAUGGGCGGG-UCCgugUCGCUg -3'
miRNA:   3'- -UGGaccGGUGCCCGCUCaAGG---AGUGG- -5'
25871 5' -59.2 NC_005337.1 + 43592 0.66 0.777345
Target:  5'- uCCUGGaCCGCGGG-GAcaUCCcCAUCa -3'
miRNA:   3'- uGGACC-GGUGCCCgCUcaAGGaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 31652 0.66 0.768127
Target:  5'- aGCUUGaGCgaCACGGGCaugGAGcUCCcCACCa -3'
miRNA:   3'- -UGGAC-CG--GUGCCCG---CUCaAGGaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 131459 0.66 0.767199
Target:  5'- cGCUcGGCCugGGcuucuccucgcacGCgGAGUUCCUCAa- -3'
miRNA:   3'- -UGGaCCGGugCC-------------CG-CUCAAGGAGUgg -5'
25871 5' -59.2 NC_005337.1 + 105057 0.66 0.767199
Target:  5'- cGCCcGGCCGCGcGGCGcugcgcAGcgCCUCcuucggcacgggcGCCg -3'
miRNA:   3'- -UGGaCCGGUGC-CCGC------UCaaGGAG-------------UGG- -5'
25871 5' -59.2 NC_005337.1 + 99142 0.66 0.758793
Target:  5'- uCCUGGCCGagugcgccgcacUGGGCG---UCCgCGCCg -3'
miRNA:   3'- uGGACCGGU------------GCCCGCucaAGGaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 10672 0.66 0.757853
Target:  5'- cGCC-GGCCGgcGGCGGGUucUCCUCgaaggcgGCCa -3'
miRNA:   3'- -UGGaCCGGUgcCCGCUCA--AGGAG-------UGG- -5'
25871 5' -59.2 NC_005337.1 + 54593 0.66 0.749349
Target:  5'- gACCUcuCCACGGGCa----CCUCGCCg -3'
miRNA:   3'- -UGGAccGGUGCCCGcucaaGGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 93971 0.66 0.749349
Target:  5'- uGCCUuGCCGCcaucgcccucGGGCGAGgaggUCACCa -3'
miRNA:   3'- -UGGAcCGGUG----------CCCGCUCaaggAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 76965 0.66 0.749349
Target:  5'- cGCUUGGCCGCGcGGUuccGAGagCggCGCCg -3'
miRNA:   3'- -UGGACCGGUGC-CCG---CUCaaGgaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 127255 0.66 0.749349
Target:  5'- gGCCUGauGCUggagGCGGGCGcGgacgUCCgCGCCa -3'
miRNA:   3'- -UGGAC--CGG----UGCCCGCuCa---AGGaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 130532 0.66 0.746496
Target:  5'- uCCUGGUgcgCGCGGGCGccaacgucaacgacGGgaucggCUUCACCa -3'
miRNA:   3'- uGGACCG---GUGCCCGC--------------UCaa----GGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 726 0.66 0.739807
Target:  5'- gGCCgcggGGUaCGCGGGCGAGagCgCggCGCCc -3'
miRNA:   3'- -UGGa---CCG-GUGCCCGCUCaaG-Ga-GUGG- -5'
25871 5' -59.2 NC_005337.1 + 101258 0.66 0.739807
Target:  5'- gACCU-GCCGCuGGCGG--UCCUCAUg -3'
miRNA:   3'- -UGGAcCGGUGcCCGCUcaAGGAGUGg -5'
25871 5' -59.2 NC_005337.1 + 14861 0.66 0.739807
Target:  5'- -gCUGGCgCgACGGGCGAGacUUCCgaCGCg -3'
miRNA:   3'- ugGACCG-G-UGCCCGCUC--AAGGa-GUGg -5'
25871 5' -59.2 NC_005337.1 + 726 0.66 0.739807
Target:  5'- gGCCgcggGGUaCGCGGGCGAGagCgCggCGCCc -3'
miRNA:   3'- -UGGa---CCG-GUGCCCGCUCaaG-Ga-GUGG- -5'
25871 5' -59.2 NC_005337.1 + 83372 0.66 0.739807
Target:  5'- gACC-GGCCGCuGGGCGcgcGcgCC-CGCCg -3'
miRNA:   3'- -UGGaCCGGUG-CCCGCu--CaaGGaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.