miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25871 5' -59.2 NC_005337.1 + 90522 0.66 0.735963
Target:  5'- uGCUUGGUCACggaGGGCGAGacggugaucacggUCUggCGCCg -3'
miRNA:   3'- -UGGACCGGUG---CCCGCUCa------------AGGa-GUGG- -5'
25871 5' -59.2 NC_005337.1 + 79434 0.66 0.730173
Target:  5'- cGCCgGGCgCGCGuGCauGUUCUUCACCa -3'
miRNA:   3'- -UGGaCCG-GUGCcCGcuCAAGGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 64008 0.66 0.730173
Target:  5'- cACCUGGCguCGGGCagcGAGU-CCaacgCGCa -3'
miRNA:   3'- -UGGACCGguGCCCG---CUCAaGGa---GUGg -5'
25871 5' -59.2 NC_005337.1 + 114596 0.66 0.730173
Target:  5'- cGCCacgcGGCCGCuGGacauaGGGUUCCUCAa- -3'
miRNA:   3'- -UGGa---CCGGUGcCCg----CUCAAGGAGUgg -5'
25871 5' -59.2 NC_005337.1 + 82957 0.67 0.724352
Target:  5'- uCCUGGCguagaugagcaccaGCGGGUgcGAGUUgCUCACg -3'
miRNA:   3'- uGGACCGg-------------UGCCCG--CUCAAgGAGUGg -5'
25871 5' -59.2 NC_005337.1 + 127038 0.67 0.720457
Target:  5'- -gCUGGCgGCGGGCGcggaGGUgcg-CACCg -3'
miRNA:   3'- ugGACCGgUGCCCGC----UCAaggaGUGG- -5'
25871 5' -59.2 NC_005337.1 + 2859 0.67 0.720457
Target:  5'- gACUUGGCCGaucGGCG----CCUCACCa -3'
miRNA:   3'- -UGGACCGGUgc-CCGCucaaGGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 53935 0.67 0.710667
Target:  5'- ---cGGCCAuCGGG-GAGUUCUgcucgCGCCu -3'
miRNA:   3'- uggaCCGGU-GCCCgCUCAAGGa----GUGG- -5'
25871 5' -59.2 NC_005337.1 + 23805 0.67 0.710667
Target:  5'- uACCUGcGCCgcACGGGCGAcuacaagccgcuGUUCa--GCCg -3'
miRNA:   3'- -UGGAC-CGG--UGCCCGCU------------CAAGgagUGG- -5'
25871 5' -59.2 NC_005337.1 + 36490 0.67 0.707718
Target:  5'- gGCCuUGGCCGCGGccgcggcgcucggcGCGAcGaUCCUgaaCGCCg -3'
miRNA:   3'- -UGG-ACCGGUGCC--------------CGCU-CaAGGA---GUGG- -5'
25871 5' -59.2 NC_005337.1 + 30157 0.67 0.700813
Target:  5'- aACCaGGuCCugGGGgGAGaUCUUCAgCu -3'
miRNA:   3'- -UGGaCC-GGugCCCgCUCaAGGAGUgG- -5'
25871 5' -59.2 NC_005337.1 + 132007 0.67 0.690904
Target:  5'- gGCCcgaGGacggaCACGGccuuccGCGAGUUCCUCuCCa -3'
miRNA:   3'- -UGGa--CCg----GUGCC------CGCUCAAGGAGuGG- -5'
25871 5' -59.2 NC_005337.1 + 74726 0.67 0.67095
Target:  5'- -aCUGGCC-CGGGgGAaucuacUUCCUgACCa -3'
miRNA:   3'- ugGACCGGuGCCCgCUc-----AAGGAgUGG- -5'
25871 5' -59.2 NC_005337.1 + 10087 0.67 0.669949
Target:  5'- uGCCgGGCgcgaaGCGGGCGAGgUCCacgaaggUCACg -3'
miRNA:   3'- -UGGaCCGg----UGCCCGCUCaAGG-------AGUGg -5'
25871 5' -59.2 NC_005337.1 + 111073 0.68 0.660924
Target:  5'- uGCUUGuCCGCGGGCGugaGGUgcgCCagGCCg -3'
miRNA:   3'- -UGGACcGGUGCCCGC---UCAa--GGagUGG- -5'
25871 5' -59.2 NC_005337.1 + 49820 0.68 0.660924
Target:  5'- uGCC-GGCCGCGcccuccGCGGGcUCCUCGuCCu -3'
miRNA:   3'- -UGGaCCGGUGCc-----CGCUCaAGGAGU-GG- -5'
25871 5' -59.2 NC_005337.1 + 58029 0.68 0.660924
Target:  5'- gGCCaGGCCGCGcucuucgacGGCGGcgUgCUCGCCa -3'
miRNA:   3'- -UGGaCCGGUGC---------CCGCUcaAgGAGUGG- -5'
25871 5' -59.2 NC_005337.1 + 85143 0.68 0.660924
Target:  5'- uCCUGGggcgcgagcuucCCGCGGaGCGAGUcgaugaCCUCGCg -3'
miRNA:   3'- uGGACC------------GGUGCC-CGCUCAa-----GGAGUGg -5'
25871 5' -59.2 NC_005337.1 + 125902 0.68 0.660924
Target:  5'- aGCCUGGCCAUugGGaGCucGUgccgcgCCUCGCa -3'
miRNA:   3'- -UGGACCGGUG--CC-CGcuCAa-----GGAGUGg -5'
25871 5' -59.2 NC_005337.1 + 123775 0.68 0.65992
Target:  5'- gGCCgcguuucccucggUGGUCuggACGGGCGuGUUCUgCGCCg -3'
miRNA:   3'- -UGG-------------ACCGG---UGCCCGCuCAAGGaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.