Results 1 - 20 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25872 | 3' | -55.8 | NC_005337.1 | + | 88343 | 0.66 | 0.899681 |
Target: 5'- cGGcGCGCGcGAGAAgaccgucuucuUCGCGCGCaacaagcgcaUGUACc -3' miRNA: 3'- -UCuUGCGC-CUCUU-----------GGCGCGCG----------ACAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 869 | 0.66 | 0.899681 |
Target: 5'- cGGGCGCGGccgggcGGAAgaGCGCGCcGaGCa -3' miRNA: 3'- uCUUGCGCC------UCUUggCGCGCGaCaUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 44175 | 0.66 | 0.899681 |
Target: 5'- cGGAACGUGGcGAugagucucuGCaCGCGCGCaaUGCg -3' miRNA: 3'- -UCUUGCGCCuCU---------UG-GCGCGCGacAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 124008 | 0.66 | 0.899681 |
Target: 5'- uGAACGCgccgccgccgauGGAGGcgccccgcgaagGCCGCGCGcCUGccGCg -3' miRNA: 3'- uCUUGCG------------CCUCU------------UGGCGCGC-GACa-UG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 52575 | 0.66 | 0.899681 |
Target: 5'- ---cCGCGGGGAcggcGCgGCGgCGCUGgcgGCc -3' miRNA: 3'- ucuuGCGCCUCU----UGgCGC-GCGACa--UG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 869 | 0.66 | 0.899681 |
Target: 5'- cGGGCGCGGccgggcGGAAgaGCGCGCcGaGCa -3' miRNA: 3'- uCUUGCGCC------UCUUggCGCGCGaCaUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 2900 | 0.66 | 0.899681 |
Target: 5'- ---cCGCGGucgaAGAcguACCGCGCGCgcuucucGUGCu -3' miRNA: 3'- ucuuGCGCC----UCU---UGGCGCGCGa------CAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 102834 | 0.66 | 0.899681 |
Target: 5'- aAGAcGCGCGucauggucGGGCCGCGCGCcaggaaGUGCa -3' miRNA: 3'- -UCU-UGCGCcu------CUUGGCGCGCGa-----CAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 46807 | 0.66 | 0.899681 |
Target: 5'- uGGGACGCcGAGG---GCGCGCUGgcCa -3' miRNA: 3'- -UCUUGCGcCUCUuggCGCGCGACauG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 122838 | 0.66 | 0.899031 |
Target: 5'- cAGAugGagagguuuggugcUGGAGAGcCCGCGCGCc-UGCg -3' miRNA: 3'- -UCUugC-------------GCCUCUU-GGCGCGCGacAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 90833 | 0.66 | 0.895745 |
Target: 5'- cGAAcacCGCGGGGugccgcucgccguCCGCGgGCUcGUACg -3' miRNA: 3'- uCUU---GCGCCUCuu-----------GGCGCgCGA-CAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 103356 | 0.66 | 0.893073 |
Target: 5'- uGGugGUcGAGAACgGCGUGCUcGUGa -3' miRNA: 3'- uCUugCGcCUCUUGgCGCGCGA-CAUg -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 74896 | 0.66 | 0.893073 |
Target: 5'- gAGGACGcCGGGGGcgugAUgGCGCgGCUGgcgGCc -3' miRNA: 3'- -UCUUGC-GCCUCU----UGgCGCG-CGACa--UG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 6471 | 0.66 | 0.893073 |
Target: 5'- uGGugGCGGuG-ACCaGCGCGCgg-ACg -3' miRNA: 3'- uCUugCGCCuCuUGG-CGCGCGacaUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 127901 | 0.66 | 0.893073 |
Target: 5'- cGAGCGCGuGcGGGCCGagccgGUGCUGgGCa -3' miRNA: 3'- uCUUGCGC-CuCUUGGCg----CGCGACaUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 116444 | 0.66 | 0.893073 |
Target: 5'- gGGucCGagaaGGAGAucGCCGCGCGCaucgaggaGUACu -3' miRNA: 3'- -UCuuGCg---CCUCU--UGGCGCGCGa-------CAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 122282 | 0.66 | 0.886232 |
Target: 5'- --uGCGCGcGcuGACCGcCGCGCUGaACa -3' miRNA: 3'- ucuUGCGC-CucUUGGC-GCGCGACaUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 37190 | 0.66 | 0.886232 |
Target: 5'- cAGcAUGCGGuugggcacgcAGAccACCGCGCGCcgcgcGUGCg -3' miRNA: 3'- -UCuUGCGCC----------UCU--UGGCGCGCGa----CAUG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 99408 | 0.66 | 0.886232 |
Target: 5'- uAGAguucACGuCGGAGGAUgGCGCGCcGccGCa -3' miRNA: 3'- -UCU----UGC-GCCUCUUGgCGCGCGaCa-UG- -5' |
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25872 | 3' | -55.8 | NC_005337.1 | + | 88959 | 0.66 | 0.886232 |
Target: 5'- cGGAgGCGGAGGG-CGCGguccCGgUGUGCg -3' miRNA: 3'- uCUUgCGCCUCUUgGCGC----GCgACAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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