miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25872 3' -55.8 NC_005337.1 + 974 0.66 0.87916
Target:  5'- uGGAGCgGCGGGGcuggcGCgGCGCGCggaggGCg -3'
miRNA:   3'- -UCUUG-CGCCUCu----UGgCGCGCGaca--UG- -5'
25872 3' -55.8 NC_005337.1 + 44175 0.66 0.899681
Target:  5'- cGGAACGUGGcGAugagucucuGCaCGCGCGCaaUGCg -3'
miRNA:   3'- -UCUUGCGCCuCU---------UG-GCGCGCGacAUG- -5'
25872 3' -55.8 NC_005337.1 + 47939 0.66 0.871122
Target:  5'- -aAGCGUGGAGcGACugaacgccauguuCGCGCGCgaGUGCg -3'
miRNA:   3'- ucUUGCGCCUC-UUG-------------GCGCGCGa-CAUG- -5'
25872 3' -55.8 NC_005337.1 + 74896 0.66 0.893073
Target:  5'- gAGGACGcCGGGGGcgugAUgGCGCgGCUGgcgGCc -3'
miRNA:   3'- -UCUUGC-GCCUCU----UGgCGCG-CGACa--UG- -5'
25872 3' -55.8 NC_005337.1 + 124008 0.66 0.899681
Target:  5'- uGAACGCgccgccgccgauGGAGGcgccccgcgaagGCCGCGCGcCUGccGCg -3'
miRNA:   3'- uCUUGCG------------CCUCU------------UGGCGCGC-GACa-UG- -5'
25872 3' -55.8 NC_005337.1 + 127660 0.66 0.87916
Target:  5'- uGGACGUGGAGGugCuCGaGCUGaUGCu -3'
miRNA:   3'- uCUUGCGCCUCUugGcGCgCGAC-AUG- -5'
25872 3' -55.8 NC_005337.1 + 48081 0.66 0.871863
Target:  5'- cAGAGCcCGGAGuucAAgCGCGCGCgcaUGCg -3'
miRNA:   3'- -UCUUGcGCCUC---UUgGCGCGCGac-AUG- -5'
25872 3' -55.8 NC_005337.1 + 6471 0.66 0.893073
Target:  5'- uGGugGCGGuG-ACCaGCGCGCgg-ACg -3'
miRNA:   3'- uCUugCGCCuCuUGG-CGCGCGacaUG- -5'
25872 3' -55.8 NC_005337.1 + 78084 0.66 0.886232
Target:  5'- ---uUGCGGuAGAGcuuguuCCGCGCGCUGa-- -3'
miRNA:   3'- ucuuGCGCC-UCUU------GGCGCGCGACaug -5'
25872 3' -55.8 NC_005337.1 + 88959 0.66 0.886232
Target:  5'- cGGAgGCGGAGGG-CGCGguccCGgUGUGCg -3'
miRNA:   3'- uCUUgCGCCUCUUgGCGC----GCgACAUG- -5'
25872 3' -55.8 NC_005337.1 + 43880 0.66 0.871863
Target:  5'- uGGACGCGGAGAuggugauguGCaCGCGCGg----- -3'
miRNA:   3'- uCUUGCGCCUCU---------UG-GCGCGCgacaug -5'
25872 3' -55.8 NC_005337.1 + 89873 0.66 0.871863
Target:  5'- cGAGCGCgcgcuggcgauGGAGA---GCGCGCUGUucACg -3'
miRNA:   3'- uCUUGCG-----------CCUCUuggCGCGCGACA--UG- -5'
25872 3' -55.8 NC_005337.1 + 103356 0.66 0.893073
Target:  5'- uGGugGUcGAGAACgGCGUGCUcGUGa -3'
miRNA:   3'- uCUugCGcCUCUUGgCGCGCGA-CAUg -5'
25872 3' -55.8 NC_005337.1 + 122282 0.66 0.886232
Target:  5'- --uGCGCGcGcuGACCGcCGCGCUGaACa -3'
miRNA:   3'- ucuUGCGC-CucUUGGC-GCGCGACaUG- -5'
25872 3' -55.8 NC_005337.1 + 88343 0.66 0.899681
Target:  5'- cGGcGCGCGcGAGAAgaccgucuucuUCGCGCGCaacaagcgcaUGUACc -3'
miRNA:   3'- -UCuUGCGC-CUCUU-----------GGCGCGCG----------ACAUG- -5'
25872 3' -55.8 NC_005337.1 + 125969 0.66 0.871863
Target:  5'- uGAACGCGcGGAACgCGCG-GCUGcagACc -3'
miRNA:   3'- uCUUGCGCcUCUUG-GCGCgCGACa--UG- -5'
25872 3' -55.8 NC_005337.1 + 869 0.66 0.899681
Target:  5'- cGGGCGCGGccgggcGGAAgaGCGCGCcGaGCa -3'
miRNA:   3'- uCUUGCGCC------UCUUggCGCGCGaCaUG- -5'
25872 3' -55.8 NC_005337.1 + 122838 0.66 0.899031
Target:  5'- cAGAugGagagguuuggugcUGGAGAGcCCGCGCGCc-UGCg -3'
miRNA:   3'- -UCUugC-------------GCCUCUU-GGCGCGCGacAUG- -5'
25872 3' -55.8 NC_005337.1 + 869 0.66 0.899681
Target:  5'- cGGGCGCGGccgggcGGAAgaGCGCGCcGaGCa -3'
miRNA:   3'- uCUUGCGCC------UCUUggCGCGCGaCaUG- -5'
25872 3' -55.8 NC_005337.1 + 76024 0.66 0.87916
Target:  5'- --cACGCGGAaGACCGCcGCGCcGgACu -3'
miRNA:   3'- ucuUGCGCCUcUUGGCG-CGCGaCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.