miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25872 3' -55.8 NC_005337.1 + 29710 0.72 0.586638
Target:  5'- cGGACGCGcGAGGcgcGCaCGCGCGCgcgGUGu -3'
miRNA:   3'- uCUUGCGC-CUCU---UG-GCGCGCGa--CAUg -5'
25872 3' -55.8 NC_005337.1 + 32495 0.73 0.496317
Target:  5'- uGAGCGgGGGGAucCCGUGCagGUUGUGCa -3'
miRNA:   3'- uCUUGCgCCUCUu-GGCGCG--CGACAUG- -5'
25872 3' -55.8 NC_005337.1 + 123574 0.73 0.496317
Target:  5'- uGGACGCGGAGuGCCGC-UGCUGcgagcUGCg -3'
miRNA:   3'- uCUUGCGCCUCuUGGCGcGCGAC-----AUG- -5'
25872 3' -55.8 NC_005337.1 + 39260 0.73 0.51592
Target:  5'- aAGAACGCGcAGcAGCCGC-CGCUGUcGCg -3'
miRNA:   3'- -UCUUGCGCcUC-UUGGCGcGCGACA-UG- -5'
25872 3' -55.8 NC_005337.1 + 130624 0.73 0.51592
Target:  5'- cGAcuGCGCGGAcGAcgagGCCGCGgCGCUGgACg -3'
miRNA:   3'- uCU--UGCGCCU-CU----UGGCGC-GCGACaUG- -5'
25872 3' -55.8 NC_005337.1 + 19896 0.73 0.535828
Target:  5'- aGGAGCGCGuAGu-CCGCGUGCUGgACc -3'
miRNA:   3'- -UCUUGCGCcUCuuGGCGCGCGACaUG- -5'
25872 3' -55.8 NC_005337.1 + 2785 0.72 0.545883
Target:  5'- cGAGCGCGGAccgguGCCGCaugugcacuagGCGCUGcUGCa -3'
miRNA:   3'- uCUUGCGCCUcu---UGGCG-----------CGCGAC-AUG- -5'
25872 3' -55.8 NC_005337.1 + 31845 0.72 0.552957
Target:  5'- uGGACGCGGAGAaccacuccauguccACCGCgucGCGCUccACg -3'
miRNA:   3'- uCUUGCGCCUCU--------------UGGCG---CGCGAcaUG- -5'
25872 3' -55.8 NC_005337.1 + 47597 0.72 0.586638
Target:  5'- uGGGCGUGGGcGAcGCCGCGCGCgcgGCc -3'
miRNA:   3'- uCUUGCGCCU-CU-UGGCGCGCGacaUG- -5'
25872 3' -55.8 NC_005337.1 + 103535 0.74 0.467567
Target:  5'- ---cCGCccGAGGAgCGCGCGCUGUACg -3'
miRNA:   3'- ucuuGCGc-CUCUUgGCGCGCGACAUG- -5'
25872 3' -55.8 NC_005337.1 + 21906 0.74 0.467567
Target:  5'- cAGGACGCgcgcuucauGGAGGugGCCGCGCGCUccGCc -3'
miRNA:   3'- -UCUUGCG---------CCUCU--UGGCGCGCGAcaUG- -5'
25872 3' -55.8 NC_005337.1 + 10432 0.74 0.439699
Target:  5'- aGGAcgccuGCGCGGcGGugCGCGCGUcGUGCg -3'
miRNA:   3'- -UCU-----UGCGCCuCUugGCGCGCGaCAUG- -5'
25872 3' -55.8 NC_005337.1 + 101224 0.79 0.249257
Target:  5'- gAGGuCGCGGAGGcguCCGCGCGC-GUGCu -3'
miRNA:   3'- -UCUuGCGCCUCUu--GGCGCGCGaCAUG- -5'
25872 3' -55.8 NC_005337.1 + 40060 0.78 0.287812
Target:  5'- cGAAC-CGGGGAccgguACCGCGCGgaGUGCa -3'
miRNA:   3'- uCUUGcGCCUCU-----UGGCGCGCgaCAUG- -5'
25872 3' -55.8 NC_005337.1 + 56934 0.78 0.294677
Target:  5'- cGAGCGCGGAGGcggccaucucGCCGCGgGacCUGUACc -3'
miRNA:   3'- uCUUGCGCCUCU----------UGGCGCgC--GACAUG- -5'
25872 3' -55.8 NC_005337.1 + 18708 0.77 0.316032
Target:  5'- cAGAcACGCGGccAGUCGCGCGCUGUGCu -3'
miRNA:   3'- -UCU-UGCGCCucUUGGCGCGCGACAUG- -5'
25872 3' -55.8 NC_005337.1 + 121976 0.76 0.362178
Target:  5'- cGAACGCGGAcaucgugcgcGAGCUccuGCGCGCgggGUGCg -3'
miRNA:   3'- uCUUGCGCCU----------CUUGG---CGCGCGa--CAUG- -5'
25872 3' -55.8 NC_005337.1 + 128467 0.76 0.369491
Target:  5'- cGGAccgGCGCGGGaGACCGCGUGCUcgcgggcGUGCg -3'
miRNA:   3'- -UCU---UGCGCCUcUUGGCGCGCGA-------CAUG- -5'
25872 3' -55.8 NC_005337.1 + 18458 0.75 0.395445
Target:  5'- gGGGACugGCGGGGAGuCCGCGCGCcaUGUccaGCa -3'
miRNA:   3'- -UCUUG--CGCCUCUU-GGCGCGCG--ACA---UG- -5'
25872 3' -55.8 NC_005337.1 + 50393 0.74 0.439699
Target:  5'- -uGGCGCGGGGGcgcGCCGCGCGUcgGUGa -3'
miRNA:   3'- ucUUGCGCCUCU---UGGCGCGCGa-CAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.