miRNA display CGI


Results 1 - 20 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25872 5' -62.1 NC_005337.1 + 130161 0.66 0.581055
Target:  5'- cUGUCC-GCGCGuCUCcGCGcGCGCgGu -3'
miRNA:   3'- uACAGGuCGCGC-GAGaCGC-CGCGgUg -5'
25872 5' -62.1 NC_005337.1 + 61414 0.66 0.581055
Target:  5'- -cGUCCAGCaG-GUUC-GCGGacaGCCGCa -3'
miRNA:   3'- uaCAGGUCG-CgCGAGaCGCCg--CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 126038 0.66 0.581055
Target:  5'- uGUGUCuCAuGCGCGCcggUGCGGaCGCgACc -3'
miRNA:   3'- -UACAG-GU-CGCGCGag-ACGCC-GCGgUG- -5'
25872 5' -62.1 NC_005337.1 + 95124 0.66 0.580054
Target:  5'- cAUGUCC-GCGCGCgaguUCUGCaucaccaGGCuGuCCACg -3'
miRNA:   3'- -UACAGGuCGCGCG----AGACG-------CCG-C-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 2616 0.66 0.578053
Target:  5'- -cGUUCAGCGCGgcgcgcacgggcucCUCgaagcggaagGUGGCGCCGg -3'
miRNA:   3'- uaCAGGUCGCGC--------------GAGa---------CGCCGCGGUg -5'
25872 5' -62.1 NC_005337.1 + 35752 0.66 0.571061
Target:  5'- -cGUCgGGCGgGCUCccccCGGCcuuGCCGCg -3'
miRNA:   3'- uaCAGgUCGCgCGAGac--GCCG---CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 102311 0.66 0.571061
Target:  5'- -aGUCCA-UGCGC-CUGgGGCuCCGCg -3'
miRNA:   3'- uaCAGGUcGCGCGaGACgCCGcGGUG- -5'
25872 5' -62.1 NC_005337.1 + 38561 0.66 0.571061
Target:  5'- -cGUCCGGgGuCGCUgCUGCGcGCGgaCUACa -3'
miRNA:   3'- uaCAGGUCgC-GCGA-GACGC-CGC--GGUG- -5'
25872 5' -62.1 NC_005337.1 + 101237 0.66 0.571061
Target:  5'- -cGUCCGcgcGCGUGCUCgcgcugGaCGGCGCggaCGCg -3'
miRNA:   3'- uaCAGGU---CGCGCGAGa-----C-GCCGCG---GUG- -5'
25872 5' -62.1 NC_005337.1 + 91374 0.66 0.571061
Target:  5'- -cG-CCGGagcCGCGCUCgaagaccucgGCGGCGCCcCg -3'
miRNA:   3'- uaCaGGUC---GCGCGAGa---------CGCCGCGGuG- -5'
25872 5' -62.1 NC_005337.1 + 19546 0.66 0.571061
Target:  5'- -cGUCCAGCacGCGCcggacgUCguaaacgGCGGUgaGCCGCg -3'
miRNA:   3'- uaCAGGUCG--CGCG------AGa------CGCCG--CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 10547 0.66 0.56111
Target:  5'- gAUGUCCAGCaGCG-UCUGCuuccgcacgGGCgugcccagccGCCGCa -3'
miRNA:   3'- -UACAGGUCG-CGCgAGACG---------CCG----------CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 8735 0.66 0.56111
Target:  5'- -cGUCCuuGGCGCGga-UGuCGGCGCCGu -3'
miRNA:   3'- uaCAGG--UCGCGCgagAC-GCCGCGGUg -5'
25872 5' -62.1 NC_005337.1 + 85633 0.66 0.56111
Target:  5'- -cGUCCAGCuGCGCgc--UGGCGuCCGCc -3'
miRNA:   3'- uaCAGGUCG-CGCGagacGCCGC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 59264 0.66 0.56111
Target:  5'- ----aCGGUGCGCgUCaGCGGCgGCCGCc -3'
miRNA:   3'- uacagGUCGCGCG-AGaCGCCG-CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 36264 0.66 0.56111
Target:  5'- gGUGgCCAGCGCGaccagccgCUGCGcgaacGCGgCCACg -3'
miRNA:   3'- -UACaGGUCGCGCga------GACGC-----CGC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 100390 0.66 0.56111
Target:  5'- cGUGcaUCgAGUGCGCgg-GCGcGCGCUACg -3'
miRNA:   3'- -UAC--AGgUCGCGCGagaCGC-CGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 93439 0.66 0.551206
Target:  5'- cGUGUCCcGUGCgGCUCaUGCGGaagacgccCGCCGg -3'
miRNA:   3'- -UACAGGuCGCG-CGAG-ACGCC--------GCGGUg -5'
25872 5' -62.1 NC_005337.1 + 89964 0.66 0.551206
Target:  5'- -gGcCgCAGCacGCGCUCgggggaGCGGCGCCGu -3'
miRNA:   3'- uaCaG-GUCG--CGCGAGa-----CGCCGCGGUg -5'
25872 5' -62.1 NC_005337.1 + 125378 0.66 0.551206
Target:  5'- cUGUagacgCGGcCGCGC-CUGUGGCGCgGCc -3'
miRNA:   3'- uACAg----GUC-GCGCGaGACGCCGCGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.