miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25872 5' -62.1 NC_005337.1 + 109167 0.66 0.551206
Target:  5'- -cGUCC-GCGCGC---GCcGCGCCGCg -3'
miRNA:   3'- uaCAGGuCGCGCGagaCGcCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 61414 0.66 0.581055
Target:  5'- -cGUCCAGCaG-GUUC-GCGGacaGCCGCa -3'
miRNA:   3'- uaCAGGUCG-CgCGAGaCGCCg--CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 126038 0.66 0.581055
Target:  5'- uGUGUCuCAuGCGCGCcggUGCGGaCGCgACc -3'
miRNA:   3'- -UACAG-GU-CGCGCGag-ACGCC-GCGgUG- -5'
25872 5' -62.1 NC_005337.1 + 128483 0.66 0.551206
Target:  5'- ---aCC-GCGUGCUCgcggGCGuGCGUCGCg -3'
miRNA:   3'- uacaGGuCGCGCGAGa---CGC-CGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 95124 0.66 0.580054
Target:  5'- cAUGUCC-GCGCGCgaguUCUGCaucaccaGGCuGuCCACg -3'
miRNA:   3'- -UACAGGuCGCGCG----AGACG-------CCG-C-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 522 0.66 0.541356
Target:  5'- --cUCgCGGCGCagGCgcuccagCUGcCGGCGCCACu -3'
miRNA:   3'- uacAG-GUCGCG--CGa------GAC-GCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 10547 0.66 0.56111
Target:  5'- gAUGUCCAGCaGCG-UCUGCuuccgcacgGGCgugcccagccGCCGCa -3'
miRNA:   3'- -UACAGGUCG-CGCgAGACG---------CCG----------CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 101237 0.66 0.571061
Target:  5'- -cGUCCGcgcGCGUGCUCgcgcugGaCGGCGCggaCGCg -3'
miRNA:   3'- uaCAGGU---CGCGCGAGa-----C-GCCGCG---GUG- -5'
25872 5' -62.1 NC_005337.1 + 53771 0.66 0.551206
Target:  5'- -cGUCguGCG-GUUcCUGCGGCGCaACa -3'
miRNA:   3'- uaCAGguCGCgCGA-GACGCCGCGgUG- -5'
25872 5' -62.1 NC_005337.1 + 130161 0.66 0.581055
Target:  5'- cUGUCC-GCGCGuCUCcGCGcGCGCgGu -3'
miRNA:   3'- uACAGGuCGCGC-GAGaCGC-CGCGgUg -5'
25872 5' -62.1 NC_005337.1 + 29173 0.66 0.531566
Target:  5'- -cGUCCAGCuccggagaCGCg--GCGGCGCC-Cg -3'
miRNA:   3'- uaCAGGUCGc-------GCGagaCGCCGCGGuG- -5'
25872 5' -62.1 NC_005337.1 + 3298 0.66 0.551206
Target:  5'- cGUGUCgUAGCGCGCgUUGCGcaCGuCCACg -3'
miRNA:   3'- -UACAG-GUCGCGCGaGACGCc-GC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 25712 0.66 0.52184
Target:  5'- uUGUCCGGcCGCGCcgccagcgUCagGCGcGCGCCccGCa -3'
miRNA:   3'- uACAGGUC-GCGCG--------AGa-CGC-CGCGG--UG- -5'
25872 5' -62.1 NC_005337.1 + 35752 0.66 0.571061
Target:  5'- -cGUCgGGCGgGCUCccccCGGCcuuGCCGCg -3'
miRNA:   3'- uaCAGgUCGCgCGAGac--GCCG---CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 19546 0.66 0.571061
Target:  5'- -cGUCCAGCacGCGCcggacgUCguaaacgGCGGUgaGCCGCg -3'
miRNA:   3'- uaCAGGUCG--CGCG------AGa------CGCCG--CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 80196 0.66 0.531566
Target:  5'- -cGUCCAGCucGCGCgUCUcguugaugaGCGcGCGCaCGCg -3'
miRNA:   3'- uaCAGGUCG--CGCG-AGA---------CGC-CGCG-GUG- -5'
25872 5' -62.1 NC_005337.1 + 1519 0.66 0.531566
Target:  5'- -cG-CCAGCGCGUccgccacuUCgugugcggGCGGCGaCCGCu -3'
miRNA:   3'- uaCaGGUCGCGCG--------AGa-------CGCCGC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 2674 0.66 0.547259
Target:  5'- -cGUCCAGCcCGCaggacguccggagCUGCGGCGUggggaCGCg -3'
miRNA:   3'- uaCAGGUCGcGCGa------------GACGCCGCG-----GUG- -5'
25872 5' -62.1 NC_005337.1 + 19943 0.66 0.52184
Target:  5'- gAUGUgcUCAGCGaagagGCUCcGCaccGGCGCCGCg -3'
miRNA:   3'- -UACA--GGUCGCg----CGAGaCG---CCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 9921 0.66 0.551206
Target:  5'- gAUGcgggCCAGCGCgGCcugaUGCGaucGCGCCGCg -3'
miRNA:   3'- -UACa---GGUCGCG-CGag--ACGC---CGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.