miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25872 5' -62.1 NC_005337.1 + 70882 1.06 0.000905
Target:  5'- cAUGUCCAGCGCGCUCUGCGGCGCCACc -3'
miRNA:   3'- -UACAGGUCGCGCGAGACGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 57281 0.87 0.023523
Target:  5'- -cGgggCCGGCGCGCgcggCUGCGGCGCCGCu -3'
miRNA:   3'- uaCa--GGUCGCGCGa---GACGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 64366 0.79 0.082278
Target:  5'- cGUGUCCAGCGCGCgcaggagcacguugUCggaGCGGCGgCACa -3'
miRNA:   3'- -UACAGGUCGCGCG--------------AGa--CGCCGCgGUG- -5'
25872 5' -62.1 NC_005337.1 + 88258 0.77 0.113413
Target:  5'- cGUG-CCGGCGCGC-CgGCgGGCGCCGCg -3'
miRNA:   3'- -UACaGGUCGCGCGaGaCG-CCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 17023 0.75 0.150277
Target:  5'- -cGUCCAGCGCGCaCUGCGucGCGuuCCGCg -3'
miRNA:   3'- uaCAGGUCGCGCGaGACGC--CGC--GGUG- -5'
25872 5' -62.1 NC_005337.1 + 58398 0.75 0.157659
Target:  5'- -gGUCCAGCgGUGCaugauguacgccaUCgcgGCGGCGCCGCu -3'
miRNA:   3'- uaCAGGUCG-CGCG-------------AGa--CGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 50191 0.74 0.174713
Target:  5'- cGUGUCC---GCGCUCUGCGGCG-CGCg -3'
miRNA:   3'- -UACAGGucgCGCGAGACGCCGCgGUG- -5'
25872 5' -62.1 NC_005337.1 + 5057 0.74 0.192916
Target:  5'- -gGUCgcgccaCAGCaGCGCUCUGgGGCGuCCACg -3'
miRNA:   3'- uaCAG------GUCG-CGCGAGACgCCGC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 111223 0.73 0.202626
Target:  5'- --uUCCGGCGCGCg--GCGuGCGUCACg -3'
miRNA:   3'- uacAGGUCGCGCGagaCGC-CGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 2076 0.73 0.212759
Target:  5'- cGUGUCCgcgAGCGCGCUCgacGCcaGCGCCAg -3'
miRNA:   3'- -UACAGG---UCGCGCGAGa--CGc-CGCGGUg -5'
25872 5' -62.1 NC_005337.1 + 54245 0.73 0.217987
Target:  5'- -cGUCCGGCGCGUcCgggccgggUGCGGCGCUuaGCg -3'
miRNA:   3'- uaCAGGUCGCGCGaG--------ACGCCGCGG--UG- -5'
25872 5' -62.1 NC_005337.1 + 58832 0.73 0.217987
Target:  5'- -cGUCgGGCGCGCcgUGCGGCucaacaGCCACg -3'
miRNA:   3'- uaCAGgUCGCGCGagACGCCG------CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 51713 0.73 0.227125
Target:  5'- --aUCCAGCGCGCcgUgcugcacaccaacuUGCGGCGCUGCa -3'
miRNA:   3'- uacAGGUCGCGCGa-G--------------ACGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 30846 0.73 0.228771
Target:  5'- ---aCCAGCGCGUUCU-CGGUGaCCACa -3'
miRNA:   3'- uacaGGUCGCGCGAGAcGCCGC-GGUG- -5'
25872 5' -62.1 NC_005337.1 + 93805 0.72 0.234331
Target:  5'- -cGUCagCAGCuGCGCagCUGCGGCGCUAUc -3'
miRNA:   3'- uaCAG--GUCG-CGCGa-GACGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 1329 0.72 0.251693
Target:  5'- -gGUCCAGCGCGCUgCagaGCGGguCGCCGa -3'
miRNA:   3'- uaCAGGUCGCGCGA-Ga--CGCC--GCGGUg -5'
25872 5' -62.1 NC_005337.1 + 6135 0.72 0.263847
Target:  5'- -cGUCCGagcgcguuucGCGCGUUCacGCGGCaGCCGCg -3'
miRNA:   3'- uaCAGGU----------CGCGCGAGa-CGCCG-CGGUG- -5'
25872 5' -62.1 NC_005337.1 + 64223 0.71 0.276474
Target:  5'- -gGUCCgcgacgggcAGCGCcuCUUUGCGGCGCUGCg -3'
miRNA:   3'- uaCAGG---------UCGCGc-GAGACGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 69908 0.71 0.282966
Target:  5'- cGUGcUCCuGCGCGCgcuggacacggCUguguaccgccGCGGCGCCACg -3'
miRNA:   3'- -UAC-AGGuCGCGCGa----------GA----------CGCCGCGGUG- -5'
25872 5' -62.1 NC_005337.1 + 69438 0.71 0.282966
Target:  5'- -cGUCCGGCGCcaGCUC-GCGcGCGCaCAUg -3'
miRNA:   3'- uaCAGGUCGCG--CGAGaCGC-CGCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.