miRNA display CGI


Results 1 - 20 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25875 3' -52.1 NC_005337.1 + 93736 0.66 0.983572
Target:  5'- aCCGCAccACCGcgcGCCGCGgCGGCUg-- -3'
miRNA:   3'- aGGUGU--UGGCuu-UGGUGC-GCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 45760 0.66 0.983572
Target:  5'- cCCGCGuUCGu-ACCGCGCGGCgCUg- -3'
miRNA:   3'- aGGUGUuGGCuuUGGUGCGCUG-GAag -5'
25875 3' -52.1 NC_005337.1 + 48938 0.66 0.983572
Target:  5'- aCCAuCGACgGcGACCGCGCGAaguaCCUc- -3'
miRNA:   3'- aGGU-GUUGgCuUUGGUGCGCU----GGAag -5'
25875 3' -52.1 NC_005337.1 + 65215 0.66 0.983572
Target:  5'- cCCGCcGCUG--GCCACGCuGGCCa-- -3'
miRNA:   3'- aGGUGuUGGCuuUGGUGCG-CUGGaag -5'
25875 3' -52.1 NC_005337.1 + 38055 0.66 0.983572
Target:  5'- aCCAUcAUCGucucCCACGUGACCgggUCc -3'
miRNA:   3'- aGGUGuUGGCuuu-GGUGCGCUGGa--AG- -5'
25875 3' -52.1 NC_005337.1 + 56913 0.66 0.983572
Target:  5'- aCCGCGggauCCGggGCUacuucggggacaGCGUGGCCUc- -3'
miRNA:   3'- aGGUGUu---GGCuuUGG------------UGCGCUGGAag -5'
25875 3' -52.1 NC_005337.1 + 112885 0.66 0.983572
Target:  5'- gCCGCGgccGCCGAGAUCGCGUcuugggcgcuGAUCUg- -3'
miRNA:   3'- aGGUGU---UGGCUUUGGUGCG----------CUGGAag -5'
25875 3' -52.1 NC_005337.1 + 124295 0.66 0.981544
Target:  5'- gCCGUGGCCGAGG--ACGCGGCCUccgUCg -3'
miRNA:   3'- aGGUGUUGGCUUUggUGCGCUGGA---AG- -5'
25875 3' -52.1 NC_005337.1 + 98548 0.66 0.981544
Target:  5'- gCCGCGugcuugccaGCCGGGACuucguCACGCGAUCg-- -3'
miRNA:   3'- aGGUGU---------UGGCUUUG-----GUGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 34611 0.66 0.981544
Target:  5'- gCCACGGgCGcgcccAGCCGCGCGGCg--- -3'
miRNA:   3'- aGGUGUUgGCu----UUGGUGCGCUGgaag -5'
25875 3' -52.1 NC_005337.1 + 65781 0.66 0.981544
Target:  5'- cCCACGGCCGccAGCaGCGCGGCg--- -3'
miRNA:   3'- aGGUGUUGGCu-UUGgUGCGCUGgaag -5'
25875 3' -52.1 NC_005337.1 + 110243 0.66 0.981544
Target:  5'- -gCACAGCUGcguGAGCCGCGUGAgCa-- -3'
miRNA:   3'- agGUGUUGGC---UUUGGUGCGCUgGaag -5'
25875 3' -52.1 NC_005337.1 + 101517 0.66 0.981544
Target:  5'- cUCCGCGcgGCUgGAGGCCguggACGUGACCg-- -3'
miRNA:   3'- -AGGUGU--UGG-CUUUGG----UGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 53260 0.66 0.981544
Target:  5'- cUCCACGcCCGGAcuUCGCGCGcCCg-- -3'
miRNA:   3'- -AGGUGUuGGCUUu-GGUGCGCuGGaag -5'
25875 3' -52.1 NC_005337.1 + 122129 0.66 0.981544
Target:  5'- cUCCGCGAUCGucGAGUC-CGCGACCa-- -3'
miRNA:   3'- -AGGUGUUGGC--UUUGGuGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 45381 0.66 0.981544
Target:  5'- aCCACcugCGAGACCAC-CGACCc-- -3'
miRNA:   3'- aGGUGuugGCUUUGGUGcGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 114123 0.66 0.981544
Target:  5'- gCCGCGGCCuGcgGCagcguggaGCGCG-CCUUCg -3'
miRNA:   3'- aGGUGUUGG-CuuUGg-------UGCGCuGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 120540 0.66 0.979335
Target:  5'- aUCACGcucACCacuAGCCACGgCGACCUg- -3'
miRNA:   3'- aGGUGU---UGGcu-UUGGUGC-GCUGGAag -5'
25875 3' -52.1 NC_005337.1 + 67399 0.66 0.979335
Target:  5'- gUCCGCGccguuGCCGAAGuCCACGgccaGcACCUUg -3'
miRNA:   3'- -AGGUGU-----UGGCUUU-GGUGCg---C-UGGAAg -5'
25875 3' -52.1 NC_005337.1 + 16946 0.66 0.979335
Target:  5'- aCCACGGCCcuggaGAACCcgACGCGugCg-- -3'
miRNA:   3'- aGGUGUUGGc----UUUGG--UGCGCugGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.