miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25875 3' -52.1 NC_005337.1 + 71201 1.12 0.004154
Target:  5'- aUCCACAACCGAAACCACGCGACCUUCa -3'
miRNA:   3'- -AGGUGUUGGCUUUGGUGCGCUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 3109 0.8 0.39625
Target:  5'- cUCCGCGACCGcGACCGCGgcCGGCCUc- -3'
miRNA:   3'- -AGGUGUUGGCuUUGGUGC--GCUGGAag -5'
25875 3' -52.1 NC_005337.1 + 57306 0.8 0.39625
Target:  5'- gCCGCucUCGGAACCGCGCGGCCa-- -3'
miRNA:   3'- aGGUGuuGGCUUUGGUGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 124156 0.77 0.499486
Target:  5'- cUCCA-AGCuCGGcAACCGCGUGACCUUCg -3'
miRNA:   3'- -AGGUgUUG-GCU-UUGGUGCGCUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 133565 0.77 0.509481
Target:  5'- cCCGCGGCCGcgggcGugCGCGCGAgCUUCg -3'
miRNA:   3'- aGGUGUUGGCu----UugGUGCGCUgGAAG- -5'
25875 3' -52.1 NC_005337.1 + 133565 0.77 0.509481
Target:  5'- cCCGCGGCCGcgggcGugCGCGCGAgCUUCg -3'
miRNA:   3'- aGGUGUUGGCu----UugGUGCGCUgGAAG- -5'
25875 3' -52.1 NC_005337.1 + 5715 0.77 0.518547
Target:  5'- aCCGCcaGGCCGGAgcggggaGCCACGCGGCCg-- -3'
miRNA:   3'- aGGUG--UUGGCUU-------UGGUGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 103026 0.77 0.539941
Target:  5'- aUCCGCuGCCGGAGCC--GCGACCUg- -3'
miRNA:   3'- -AGGUGuUGGCUUUGGugCGCUGGAag -5'
25875 3' -52.1 NC_005337.1 + 59014 0.76 0.581445
Target:  5'- cUCgCugGAgUGGGugCGCGCGGCCUUCa -3'
miRNA:   3'- -AG-GugUUgGCUUugGUGCGCUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 12492 0.76 0.591935
Target:  5'- gUCCGCA-CCGGcguccagcagcAGCCGCGUGACCUcCg -3'
miRNA:   3'- -AGGUGUuGGCU-----------UUGGUGCGCUGGAaG- -5'
25875 3' -52.1 NC_005337.1 + 36611 0.75 0.613002
Target:  5'- cCCGCGGCCuGGAGCgcgCGCGCGACCg-- -3'
miRNA:   3'- aGGUGUUGG-CUUUG---GUGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 88758 0.75 0.613002
Target:  5'- aUCCGCGgcGCCGAcACCgACGUggaGGCCUUCg -3'
miRNA:   3'- -AGGUGU--UGGCUuUGG-UGCG---CUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 43903 0.75 0.623563
Target:  5'- aCCACGgccaucucaguGCCGGGcuccGCUguACGCGACCUUCa -3'
miRNA:   3'- aGGUGU-----------UGGCUU----UGG--UGCGCUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 70779 0.75 0.63413
Target:  5'- gCCGCGGCCGAcucggaGGCCAUGCGGCg--- -3'
miRNA:   3'- aGGUGUUGGCU------UUGGUGCGCUGgaag -5'
25875 3' -52.1 NC_005337.1 + 53910 0.75 0.655251
Target:  5'- gUCCGCGACCGgcGCgaACGCGugCUg- -3'
miRNA:   3'- -AGGUGUUGGCuuUGg-UGCGCugGAag -5'
25875 3' -52.1 NC_005337.1 + 105781 0.75 0.655251
Target:  5'- gCCGCGcGCCGcgcGCCGCGCGGCCg-- -3'
miRNA:   3'- aGGUGU-UGGCuu-UGGUGCGCUGGaag -5'
25875 3' -52.1 NC_005337.1 + 28836 0.74 0.665787
Target:  5'- aCCAC-AUCGAGACCAUGCGGCa--- -3'
miRNA:   3'- aGGUGuUGGCUUUGGUGCGCUGgaag -5'
25875 3' -52.1 NC_005337.1 + 128542 0.74 0.665787
Target:  5'- gCCAgAGCCcGAGCgcggcauaCACGCGGCCUUCa -3'
miRNA:   3'- aGGUgUUGGcUUUG--------GUGCGCUGGAAG- -5'
25875 3' -52.1 NC_005337.1 + 82253 0.74 0.665787
Target:  5'- cUCCAUGACCGc-GCgCGCGCGGCCguccgUCa -3'
miRNA:   3'- -AGGUGUUGGCuuUG-GUGCGCUGGa----AG- -5'
25875 3' -52.1 NC_005337.1 + 55489 0.74 0.676294
Target:  5'- gCCAUGACCGAgGGCacgaACGUGAUCUUCg -3'
miRNA:   3'- aGGUGUUGGCU-UUGg---UGCGCUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.