Results 1 - 20 of 249 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25875 | 3' | -52.1 | NC_005337.1 | + | 57729 | 0.71 | 0.814804 |
Target: 5'- aCCACAAC----GCCACGCGcaagGCCUUCc -3' miRNA: 3'- aGGUGUUGgcuuUGGUGCGC----UGGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 76999 | 0.73 | 0.738179 |
Target: 5'- gCCGCGcgcGCCGGccCCGCGCGGCCc-- -3' miRNA: 3'- aGGUGU---UGGCUuuGGUGCGCUGGaag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 109095 | 0.73 | 0.757141 |
Target: 5'- gCCGCGGCCGAGGCCagggccacacagaGCGCGgacACCgcgUCc -3' miRNA: 3'- aGGUGUUGGCUUUGG-------------UGCGC---UGGa--AG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 13344 | 0.72 | 0.767928 |
Target: 5'- aCCACGaacgggcacgcGCCGGGA-CACGCGGCgUUCa -3' miRNA: 3'- aGGUGU-----------UGGCUUUgGUGCGCUGgAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 20765 | 0.72 | 0.767928 |
Target: 5'- cCCAgGGCCGcgGCCACGCG--CUUCg -3' miRNA: 3'- aGGUgUUGGCuuUGGUGCGCugGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 15998 | 0.72 | 0.787134 |
Target: 5'- gUCGCAGCugCGAGACCguacGCGCGGCCggCa -3' miRNA: 3'- aGGUGUUG--GCUUUGG----UGCGCUGGaaG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 68441 | 0.72 | 0.787134 |
Target: 5'- gUCCGCucUCGGAGCCGCGCucaaggacgGcACCUUCg -3' miRNA: 3'- -AGGUGuuGGCUUUGGUGCG---------C-UGGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 110217 | 0.72 | 0.787134 |
Target: 5'- gCCGCGGCCGcgGCCGCGUcGCCc-- -3' miRNA: 3'- aGGUGUUGGCuuUGGUGCGcUGGaag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 40466 | 0.71 | 0.814804 |
Target: 5'- gCCGCAGaCGAAACuggagCACGCGACCacgUCg -3' miRNA: 3'- aGGUGUUgGCUUUG-----GUGCGCUGGa--AG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 45838 | 0.73 | 0.738179 |
Target: 5'- uUCCGCGACCGGcgcguCCGCGggaagcuccuCGAUCUUCa -3' miRNA: 3'- -AGGUGUUGGCUuu---GGUGC----------GCUGGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 41504 | 0.73 | 0.738179 |
Target: 5'- cCCGCGAUgGAGcgcauCCGCGCGGCCaUCc -3' miRNA: 3'- aGGUGUUGgCUUu----GGUGCGCUGGaAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 55489 | 0.74 | 0.676294 |
Target: 5'- gCCAUGACCGAgGGCacgaACGUGAUCUUCg -3' miRNA: 3'- aGGUGUUGGCU-UUGg---UGCGCUGGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 3109 | 0.8 | 0.39625 |
Target: 5'- cUCCGCGACCGcGACCGCGgcCGGCCUc- -3' miRNA: 3'- -AGGUGUUGGCuUUGGUGC--GCUGGAag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 133565 | 0.77 | 0.509481 |
Target: 5'- cCCGCGGCCGcgggcGugCGCGCGAgCUUCg -3' miRNA: 3'- aGGUGUUGGCu----UugGUGCGCUgGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 5715 | 0.77 | 0.518547 |
Target: 5'- aCCGCcaGGCCGGAgcggggaGCCACGCGGCCg-- -3' miRNA: 3'- aGGUG--UUGGCUU-------UGGUGCGCUGGaag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 36611 | 0.75 | 0.613002 |
Target: 5'- cCCGCGGCCuGGAGCgcgCGCGCGACCg-- -3' miRNA: 3'- aGGUGUUGG-CUUUG---GUGCGCUGGaag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 88758 | 0.75 | 0.613002 |
Target: 5'- aUCCGCGgcGCCGAcACCgACGUggaGGCCUUCg -3' miRNA: 3'- -AGGUGU--UGGCUuUGG-UGCG---CUGGAAG- -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 70779 | 0.75 | 0.63413 |
Target: 5'- gCCGCGGCCGAcucggaGGCCAUGCGGCg--- -3' miRNA: 3'- aGGUGUUGGCU------UUGGUGCGCUGgaag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 53910 | 0.75 | 0.655251 |
Target: 5'- gUCCGCGACCGgcGCgaACGCGugCUg- -3' miRNA: 3'- -AGGUGUUGGCuuUGg-UGCGCugGAag -5' |
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25875 | 3' | -52.1 | NC_005337.1 | + | 128542 | 0.74 | 0.665787 |
Target: 5'- gCCAgAGCCcGAGCgcggcauaCACGCGGCCUUCa -3' miRNA: 3'- aGGUgUUGGcUUUG--------GUGCGCUGGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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