miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25875 5' -56 NC_005337.1 + 91210 0.66 0.917236
Target:  5'- gACGGGCgcGCCGCCggUGGUCagcgcguccauguggUCGGCCa -3'
miRNA:   3'- -UGCUUGa-UGGCGG--GCCAGa--------------AGCUGGc -5'
25875 5' -56 NC_005337.1 + 96592 0.66 0.916664
Target:  5'- cUGGACgccGCCGCCCucgaacUCUUCGACgGg -3'
miRNA:   3'- uGCUUGa--UGGCGGGcc----AGAAGCUGgC- -5'
25875 5' -56 NC_005337.1 + 52060 0.66 0.916664
Target:  5'- -gGAGCUG--GUUCGGcUCUUCGACCGc -3'
miRNA:   3'- ugCUUGAUggCGGGCC-AGAAGCUGGC- -5'
25875 5' -56 NC_005337.1 + 50393 0.66 0.916664
Target:  5'- gGCGGACaACUGCCCcucGGUCaccgUCG-CCa -3'
miRNA:   3'- -UGCUUGaUGGCGGG---CCAGa---AGCuGGc -5'
25875 5' -56 NC_005337.1 + 86816 0.66 0.916664
Target:  5'- aGCGAcACggACCGCCCauGGUCggUCGAUUu -3'
miRNA:   3'- -UGCU-UGa-UGGCGGG--CCAGa-AGCUGGc -5'
25875 5' -56 NC_005337.1 + 63273 0.66 0.910814
Target:  5'- gUGAGCacgguCUGCCCGGUCU-CGAUg- -3'
miRNA:   3'- uGCUUGau---GGCGGGCCAGAaGCUGgc -5'
25875 5' -56 NC_005337.1 + 58001 0.66 0.910814
Target:  5'- cAUGAAcCUGCugCGCCCGGgcgugC-UCGGCCa -3'
miRNA:   3'- -UGCUU-GAUG--GCGGGCCa----GaAGCUGGc -5'
25875 5' -56 NC_005337.1 + 11068 0.66 0.910814
Target:  5'- cGCGAG--GCCGCagauCGGUCgccgccgCGACCGc -3'
miRNA:   3'- -UGCUUgaUGGCGg---GCCAGaa-----GCUGGC- -5'
25875 5' -56 NC_005337.1 + 129627 0.66 0.90473
Target:  5'- gGCG-GCUcgugGCCGCCgGGUCU--GACCu -3'
miRNA:   3'- -UGCuUGA----UGGCGGgCCAGAagCUGGc -5'
25875 5' -56 NC_005337.1 + 36142 0.66 0.90473
Target:  5'- cACGGACccGCCGCCgcggugccUGGUCacggUgGACCGg -3'
miRNA:   3'- -UGCUUGa-UGGCGG--------GCCAGa---AgCUGGC- -5'
25875 5' -56 NC_005337.1 + 74110 0.66 0.90473
Target:  5'- uCGAAgUACUGCCUGGUCcgcaaCGgcGCCGu -3'
miRNA:   3'- uGCUUgAUGGCGGGCCAGaa---GC--UGGC- -5'
25875 5' -56 NC_005337.1 + 71619 0.66 0.898414
Target:  5'- cACGGACgacgacauCCGCCUGcUCUUCG-CCa -3'
miRNA:   3'- -UGCUUGau------GGCGGGCcAGAAGCuGGc -5'
25875 5' -56 NC_005337.1 + 93384 0.66 0.896475
Target:  5'- cUGAcCUGCUGCCUgugcaugucuuaguGGUCUUgGACCu -3'
miRNA:   3'- uGCUuGAUGGCGGG--------------CCAGAAgCUGGc -5'
25875 5' -56 NC_005337.1 + 23446 0.66 0.891869
Target:  5'- -gGAGCaGCCGCCUGGg---CGACUa -3'
miRNA:   3'- ugCUUGaUGGCGGGCCagaaGCUGGc -5'
25875 5' -56 NC_005337.1 + 74245 0.66 0.891869
Target:  5'- gGCGggUcGCCGCgCgGGUCUccgCGcGCCGa -3'
miRNA:   3'- -UGCuuGaUGGCG-GgCCAGAa--GC-UGGC- -5'
25875 5' -56 NC_005337.1 + 110518 0.66 0.885099
Target:  5'- gACGGACUGCgGCuuG-UCggCGGCCu -3'
miRNA:   3'- -UGCUUGAUGgCGggCcAGaaGCUGGc -5'
25875 5' -56 NC_005337.1 + 120828 0.66 0.885099
Target:  5'- uGCGAcugcuGCUACCcagaggcCCCGGUgCUggcgcUCGACCGc -3'
miRNA:   3'- -UGCU-----UGAUGGc------GGGCCA-GA-----AGCUGGC- -5'
25875 5' -56 NC_005337.1 + 39758 0.66 0.885099
Target:  5'- uACGuGCUguaCGCgCGcGUCUUCGACCu -3'
miRNA:   3'- -UGCuUGAug-GCGgGC-CAGAAGCUGGc -5'
25875 5' -56 NC_005337.1 + 51743 0.67 0.878107
Target:  5'- gGCGGcagGCUGcCCGCCCuGGcgCUggaCGGCCGc -3'
miRNA:   3'- -UGCU---UGAU-GGCGGG-CCa-GAa--GCUGGC- -5'
25875 5' -56 NC_005337.1 + 78014 0.67 0.878107
Target:  5'- aGCG-ACUccACCGCgUCGGcCUcgUCGGCCGg -3'
miRNA:   3'- -UGCuUGA--UGGCG-GGCCaGA--AGCUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.