miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25875 5' -56 NC_005337.1 + 1984 0.69 0.788203
Target:  5'- gACGAGCU-CCaGCUCGcGUCggaCGACCGc -3'
miRNA:   3'- -UGCUUGAuGG-CGGGC-CAGaa-GCUGGC- -5'
25875 5' -56 NC_005337.1 + 11068 0.66 0.910814
Target:  5'- cGCGAG--GCCGCagauCGGUCgccgccgCGACCGc -3'
miRNA:   3'- -UGCUUgaUGGCGg---GCCAGaa-----GCUGGC- -5'
25875 5' -56 NC_005337.1 + 23446 0.66 0.891869
Target:  5'- -gGAGCaGCCGCCUGGg---CGACUa -3'
miRNA:   3'- ugCUUGaUGGCGGGCCagaaGCUGGc -5'
25875 5' -56 NC_005337.1 + 25386 0.69 0.750783
Target:  5'- cGCGcucGCUGCCGCCgCcGUCgaCGACCGc -3'
miRNA:   3'- -UGCu--UGAUGGCGG-GcCAGaaGCUGGC- -5'
25875 5' -56 NC_005337.1 + 26931 0.68 0.796335
Target:  5'- -gGAGacGCCGCCCacgccuuguggcuGGUCUUCGugCGc -3'
miRNA:   3'- ugCUUgaUGGCGGG-------------CCAGAAGCugGC- -5'
25875 5' -56 NC_005337.1 + 36142 0.66 0.90473
Target:  5'- cACGGACccGCCGCCgcggugccUGGUCacggUgGACCGg -3'
miRNA:   3'- -UGCUUGa-UGGCGG--------GCCAGa---AgCUGGC- -5'
25875 5' -56 NC_005337.1 + 39472 0.73 0.520526
Target:  5'- gGCGGACgUGCuCGCCgaGGUCUacgccgccgaUCGACCGg -3'
miRNA:   3'- -UGCUUG-AUG-GCGGg-CCAGA----------AGCUGGC- -5'
25875 5' -56 NC_005337.1 + 39758 0.66 0.885099
Target:  5'- uACGuGCUguaCGCgCGcGUCUUCGACCu -3'
miRNA:   3'- -UGCuUGAug-GCGgGC-CAGAAGCUGGc -5'
25875 5' -56 NC_005337.1 + 42887 0.75 0.454242
Target:  5'- aGCGGGgcGCCGCCgaGGUCUUCGAgCGg -3'
miRNA:   3'- -UGCUUgaUGGCGGg-CCAGAAGCUgGC- -5'
25875 5' -56 NC_005337.1 + 44231 0.67 0.870897
Target:  5'- gGCGAGCgccgagGCCGUCgCGGacaugauuucguUCaUCGACCGc -3'
miRNA:   3'- -UGCUUGa-----UGGCGG-GCC------------AGaAGCUGGC- -5'
25875 5' -56 NC_005337.1 + 49289 0.67 0.870897
Target:  5'- gGCGAACg--CGCCCGGgCg--GACCGg -3'
miRNA:   3'- -UGCUUGaugGCGGGCCaGaagCUGGC- -5'
25875 5' -56 NC_005337.1 + 50330 0.67 0.846431
Target:  5'- cGCGG---ACCGCCCGGUacccgccgccCGGCCGa -3'
miRNA:   3'- -UGCUugaUGGCGGGCCAgaa-------GCUGGC- -5'
25875 5' -56 NC_005337.1 + 50393 0.66 0.916664
Target:  5'- gGCGGACaACUGCCCcucGGUCaccgUCG-CCa -3'
miRNA:   3'- -UGCUUGaUGGCGGG---CCAGa---AGCuGGc -5'
25875 5' -56 NC_005337.1 + 50428 0.72 0.610555
Target:  5'- gGCGGGCgcuuCCGCCCGGgaUUCGGgCGg -3'
miRNA:   3'- -UGCUUGau--GGCGGGCCagAAGCUgGC- -5'
25875 5' -56 NC_005337.1 + 51743 0.67 0.878107
Target:  5'- gGCGGcagGCUGcCCGCCCuGGcgCUggaCGGCCGc -3'
miRNA:   3'- -UGCU---UGAU-GGCGGG-CCa-GAa--GCUGGC- -5'
25875 5' -56 NC_005337.1 + 52060 0.66 0.916664
Target:  5'- -gGAGCUG--GUUCGGcUCUUCGACCGc -3'
miRNA:   3'- ugCUUGAUggCGGGCC-AGAAGCUGGC- -5'
25875 5' -56 NC_005337.1 + 53005 0.68 0.806113
Target:  5'- cGCGGACacgcCCGCCCGG-CUgCGGCuCGu -3'
miRNA:   3'- -UGCUUGau--GGCGGGCCaGAaGCUG-GC- -5'
25875 5' -56 NC_005337.1 + 53040 0.68 0.8234
Target:  5'- -gGAGCUGCCggcgcaacgGCCUGGUCU-CGgacACCGa -3'
miRNA:   3'- ugCUUGAUGG---------CGGGCCAGAaGC---UGGC- -5'
25875 5' -56 NC_005337.1 + 57389 0.76 0.392803
Target:  5'- gGCGAGCUGCUGCCCGaGaUUUCcGCCGa -3'
miRNA:   3'- -UGCUUGAUGGCGGGC-CaGAAGcUGGC- -5'
25875 5' -56 NC_005337.1 + 58001 0.66 0.910814
Target:  5'- cAUGAAcCUGCugCGCCCGGgcgugC-UCGGCCa -3'
miRNA:   3'- -UGCUU-GAUG--GCGGGCCa----GaAGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.