miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 3' -55 NC_005337.1 + 33337 0.66 0.917952
Target:  5'- -aUCCAgGGCU-UGcUGGGGuCGGUGCg -3'
miRNA:   3'- gaAGGUgCCGGuGCuACUCU-GCCACG- -5'
25877 3' -55 NC_005337.1 + 72170 0.66 0.917952
Target:  5'- gUUCCuggaGGCCACGggGAa--GGUGUa -3'
miRNA:   3'- gAAGGug--CCGGUGCuaCUcugCCACG- -5'
25877 3' -55 NC_005337.1 + 19063 0.66 0.917952
Target:  5'- gCUgugCCGCGGCCacagcaggugcgGCGAguugaaGAGGCGGacgccgGCg -3'
miRNA:   3'- -GAa--GGUGCCGG------------UGCUa-----CUCUGCCa-----CG- -5'
25877 3' -55 NC_005337.1 + 82571 0.66 0.917376
Target:  5'- ---gCACGGCgcgCugGAUcuccaugGAGACGGUGUc -3'
miRNA:   3'- gaagGUGCCG---GugCUA-------CUCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 80504 0.66 0.912084
Target:  5'- --cCCGCGGCCg----GGGGCGG-GCa -3'
miRNA:   3'- gaaGGUGCCGGugcuaCUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 51925 0.66 0.912084
Target:  5'- -gUCgGCGGCCACGcuccUGGacuuccuguuGGCGGUGg -3'
miRNA:   3'- gaAGgUGCCGGUGCu---ACU----------CUGCCACg -5'
25877 3' -55 NC_005337.1 + 97619 0.66 0.912084
Target:  5'- --gCCGCGGCCuuCGcgGAcgggacguccaGACGcGUGCu -3'
miRNA:   3'- gaaGGUGCCGGu-GCuaCU-----------CUGC-CACG- -5'
25877 3' -55 NC_005337.1 + 81848 0.66 0.912084
Target:  5'- --gCCAgGGCCcgGCGuccGUGAagagGAUGGUGCa -3'
miRNA:   3'- gaaGGUgCCGG--UGC---UACU----CUGCCACG- -5'
25877 3' -55 NC_005337.1 + 99677 0.66 0.912084
Target:  5'- -gUCCGCGGCCugGgcGuGGUGGacccgGCg -3'
miRNA:   3'- gaAGGUGCCGGugCuaCuCUGCCa----CG- -5'
25877 3' -55 NC_005337.1 + 66320 0.66 0.912084
Target:  5'- --gCCGCGGUCGCGGgcuGGCGacacGUGCu -3'
miRNA:   3'- gaaGGUGCCGGUGCUacuCUGC----CACG- -5'
25877 3' -55 NC_005337.1 + 116509 0.67 0.905975
Target:  5'- ---gCugGGCCA-GAUccuGACGGUGCu -3'
miRNA:   3'- gaagGugCCGGUgCUAcu-CUGCCACG- -5'
25877 3' -55 NC_005337.1 + 9264 0.67 0.905975
Target:  5'- -gUCCACGcGCUcuAUGAggcUGuGGAUGGUGCu -3'
miRNA:   3'- gaAGGUGC-CGG--UGCU---AC-UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 4210 0.67 0.905975
Target:  5'- aUUCCAgCGGCguCGGUGcaaaaGGUGCg -3'
miRNA:   3'- gAAGGU-GCCGguGCUACucug-CCACG- -5'
25877 3' -55 NC_005337.1 + 36497 0.67 0.899629
Target:  5'- --gCCGCGGCCGCGgcGcu-CGGcGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCucuGCCaCG- -5'
25877 3' -55 NC_005337.1 + 109531 0.67 0.899629
Target:  5'- --cCCGCGcGgCGCGAUG--GCGGUGUa -3'
miRNA:   3'- gaaGGUGC-CgGUGCUACucUGCCACG- -5'
25877 3' -55 NC_005337.1 + 14053 0.67 0.893048
Target:  5'- -cUCCAUGGCgAucuUGA-GGGACaGGUGCu -3'
miRNA:   3'- gaAGGUGCCGgU---GCUaCUCUG-CCACG- -5'
25877 3' -55 NC_005337.1 + 1269 0.67 0.893048
Target:  5'- --gCCGCaggauGGCC-CGcgGAGGCGGgucgGCg -3'
miRNA:   3'- gaaGGUG-----CCGGuGCuaCUCUGCCa---CG- -5'
25877 3' -55 NC_005337.1 + 10430 0.67 0.886235
Target:  5'- -gUCCAUGcacGCCGCGAacgccGGGACGGaGCc -3'
miRNA:   3'- gaAGGUGC---CGGUGCUa----CUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 922 0.67 0.886235
Target:  5'- --gCgGCGGCgGCGgcGAGGCGGcggaGCg -3'
miRNA:   3'- gaaGgUGCCGgUGCuaCUCUGCCa---CG- -5'
25877 3' -55 NC_005337.1 + 48019 0.67 0.886235
Target:  5'- -gUUCACGGCCuucguGCGcaacGcGACGGUGCc -3'
miRNA:   3'- gaAGGUGCCGG-----UGCua--CuCUGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.