miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 122963 0.66 0.808707
Target:  5'- gCCGCcaacaacACCaAGC-UGCuGAUCGUGGACg- -3'
miRNA:   3'- -GGCG-------UGG-UCGaACG-CUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 101915 0.67 0.800676
Target:  5'- -aGCACCGGCUgguccUGgaGACCGUccuGGACg- -3'
miRNA:   3'- ggCGUGGUCGA-----ACg-CUGGCA---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 91281 0.67 0.800676
Target:  5'- gCCGCACCAGCUgGCu-CUGguagaagaUGGACg- -3'
miRNA:   3'- -GGCGUGGUCGAaCGcuGGC--------ACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 130656 0.67 0.800676
Target:  5'- aCGCACaGGUgcccUGCGACCGcgagUGGGCg- -3'
miRNA:   3'- gGCGUGgUCGa---ACGCUGGC----ACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 125924 0.67 0.795252
Target:  5'- gCCGCGCCucgcagauugccccGCUgcucgagGCGGgCGUGGGCg- -3'
miRNA:   3'- -GGCGUGGu-------------CGAa------CGCUgGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 123896 0.67 0.791607
Target:  5'- -aGCACCAGCUgcGUGGCCGccUGGuucuGCUa -3'
miRNA:   3'- ggCGUGGUCGAa-CGCUGGC--ACC----UGAa -5'
25877 5' -57.1 NC_005337.1 + 126048 0.67 0.790692
Target:  5'- gCGCGCCGGUgcggacgcgacccUUGcCGACC-UGGACg- -3'
miRNA:   3'- gGCGUGGUCG-------------AAC-GCUGGcACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 121214 0.67 0.782393
Target:  5'- cCCGCGCgCAGCa-GCGACac-GGACUg -3'
miRNA:   3'- -GGCGUG-GUCGaaCGCUGgcaCCUGAa -5'
25877 5' -57.1 NC_005337.1 + 129589 0.67 0.782393
Target:  5'- gCUGCucaaguCCGcGCgaGCGACCGUGGAg-- -3'
miRNA:   3'- -GGCGu-----GGU-CGaaCGCUGGCACCUgaa -5'
25877 5' -57.1 NC_005337.1 + 82740 0.67 0.773042
Target:  5'- gCGgAgCAGCgagugUGCGAUgGUGGGCUc -3'
miRNA:   3'- gGCgUgGUCGa----ACGCUGgCACCUGAa -5'
25877 5' -57.1 NC_005337.1 + 25445 0.67 0.773042
Target:  5'- cCCGCGCgcuuCGGCaccguggacGCGugCGUGGACg- -3'
miRNA:   3'- -GGCGUG----GUCGaa-------CGCugGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 31349 0.67 0.773042
Target:  5'- aCCaGCACCAGCUUGUGGUCGcaGGAg-- -3'
miRNA:   3'- -GG-CGUGGUCGAACGCUGGCa-CCUgaa -5'
25877 5' -57.1 NC_005337.1 + 58820 0.67 0.773042
Target:  5'- gCUGCGCCAGaucgucggGCGcGCCGUGcGGCUc -3'
miRNA:   3'- -GGCGUGGUCgaa-----CGC-UGGCAC-CUGAa -5'
25877 5' -57.1 NC_005337.1 + 53838 0.67 0.763563
Target:  5'- cUCGgACCGGCUggcgcUGCGcGCCGcGGACg- -3'
miRNA:   3'- -GGCgUGGUCGA-----ACGC-UGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 54240 0.67 0.763563
Target:  5'- gCCGCGCCAGCgUGUucACCacGGACUa -3'
miRNA:   3'- -GGCGUGGUCGaACGc-UGGcaCCUGAa -5'
25877 5' -57.1 NC_005337.1 + 62794 0.67 0.762609
Target:  5'- aCCGCGuccggcguggcguCCAGCgagaccUGCGGCaCGUGGuACUUc -3'
miRNA:   3'- -GGCGU-------------GGUCGa-----ACGCUG-GCACC-UGAA- -5'
25877 5' -57.1 NC_005337.1 + 76037 0.67 0.753968
Target:  5'- gCCGCGCCGGaCUUGCGcuccaugaccGCCGcGcGGCg- -3'
miRNA:   3'- -GGCGUGGUC-GAACGC----------UGGCaC-CUGaa -5'
25877 5' -57.1 NC_005337.1 + 50958 0.68 0.724565
Target:  5'- gCCGCGCCccuAGCcgGuCGACCGggcgGGGCg- -3'
miRNA:   3'- -GGCGUGG---UCGaaC-GCUGGCa---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68287 0.68 0.724565
Target:  5'- uCUGCgGCCGGCcgGCGG-CGUGGACg- -3'
miRNA:   3'- -GGCG-UGGUCGaaCGCUgGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 60946 0.68 0.714591
Target:  5'- gCCGCGCCGGCaUGCG-CaugGGGCg- -3'
miRNA:   3'- -GGCGUGGUCGaACGCuGgcaCCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.