miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25881 5' -59.1 NC_005337.1 + 52902 0.66 0.802787
Target:  5'- uCCCCGa-CUCCuGGGAgaaggacuucuacguGCCCU-GCGGc -3'
miRNA:   3'- -GGGGCcaGAGGuCCUU---------------CGGGAaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 48163 0.66 0.799303
Target:  5'- -gCCGGaCUCCucgcgcgcGGAGGCgCUgcUGCGGg -3'
miRNA:   3'- ggGGCCaGAGGu-------CCUUCGgGA--ACGCC- -5'
25881 5' -59.1 NC_005337.1 + 131500 0.66 0.790494
Target:  5'- -aCCGGUCcgcgcUCguGGAcAGCCUUgucaUGCGGa -3'
miRNA:   3'- ggGGCCAG-----AGguCCU-UCGGGA----ACGCC- -5'
25881 5' -59.1 NC_005337.1 + 88901 0.66 0.790494
Target:  5'- gCgCCGucCUCCAGGAAGUCCUgGCu- -3'
miRNA:   3'- -GgGGCcaGAGGUCCUUCGGGAaCGcc -5'
25881 5' -59.1 NC_005337.1 + 81675 0.66 0.790494
Target:  5'- aCCCCGaG-CUCCuGGAAGUgCgagUGCaGGc -3'
miRNA:   3'- -GGGGC-CaGAGGuCCUUCGgGa--ACG-CC- -5'
25881 5' -59.1 NC_005337.1 + 114293 0.66 0.772477
Target:  5'- gCCCGaGgacCUCCuGGAggAGCUCUcGCGGc -3'
miRNA:   3'- gGGGC-Ca--GAGGuCCU--UCGGGAaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 85010 0.66 0.763286
Target:  5'- gCCCUGcacgauGUCcaCCAGcGAGCCCUcGCGGg -3'
miRNA:   3'- -GGGGC------CAGa-GGUCcUUCGGGAaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 19506 0.67 0.744581
Target:  5'- gCCUucaCGGUCUCCgAGGAgAGCaCCgagUGcCGGa -3'
miRNA:   3'- -GGG---GCCAGAGG-UCCU-UCG-GGa--AC-GCC- -5'
25881 5' -59.1 NC_005337.1 + 28319 0.67 0.735084
Target:  5'- gCgCGcGUCgUCCAGGAacagcAGCCCgugGUGGa -3'
miRNA:   3'- gGgGC-CAG-AGGUCCU-----UCGGGaa-CGCC- -5'
25881 5' -59.1 NC_005337.1 + 86096 0.67 0.715843
Target:  5'- uCCCCGGagacgcaCUCCGGGucccAGCaCUcGCGGg -3'
miRNA:   3'- -GGGGCCa------GAGGUCCu---UCGgGAaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 59113 0.67 0.714873
Target:  5'- uUCCGGUgcguggaCUUCGGGAAguucuaccuGCCCgUGCGGu -3'
miRNA:   3'- gGGGCCA-------GAGGUCCUU---------CGGGaACGCC- -5'
25881 5' -59.1 NC_005337.1 + 89725 0.68 0.696331
Target:  5'- aCCCGGUaccgCUCCAGGAuggAGUUCUUGa-- -3'
miRNA:   3'- gGGGCCA----GAGGUCCU---UCGGGAACgcc -5'
25881 5' -59.1 NC_005337.1 + 78818 0.68 0.686494
Target:  5'- aCCCaGUCUCCGGGcAGCag--GUGGa -3'
miRNA:   3'- gGGGcCAGAGGUCCuUCGggaaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 66057 0.68 0.686494
Target:  5'- aCCCGGaCgccgUCAGGcGGGCCCgcaGCGGc -3'
miRNA:   3'- gGGGCCaGa---GGUCC-UUCGGGaa-CGCC- -5'
25881 5' -59.1 NC_005337.1 + 76714 0.68 0.686494
Target:  5'- gCCC-GUCUCguGGAagagcagcAGCCCgugcaUGCGGu -3'
miRNA:   3'- gGGGcCAGAGguCCU--------UCGGGa----ACGCC- -5'
25881 5' -59.1 NC_005337.1 + 4020 0.68 0.686494
Target:  5'- gUCCCGcaggCUCauggcgGGGAAGCCCacGCGGa -3'
miRNA:   3'- -GGGGCca--GAGg-----UCCUUCGGGaaCGCC- -5'
25881 5' -59.1 NC_005337.1 + 59673 0.68 0.6667
Target:  5'- gUCgCGG-CUCCGGGAGGCgCCgaUGCGc -3'
miRNA:   3'- -GGgGCCaGAGGUCCUUCG-GGa-ACGCc -5'
25881 5' -59.1 NC_005337.1 + 15646 0.68 0.656759
Target:  5'- uCCCCGaaCUCCAGGAagAGCUCg-GCGa -3'
miRNA:   3'- -GGGGCcaGAGGUCCU--UCGGGaaCGCc -5'
25881 5' -59.1 NC_005337.1 + 95070 0.68 0.6468
Target:  5'- gCCCGGg-UCCGGGuccgcguAGCCCgcgGCGa -3'
miRNA:   3'- gGGGCCagAGGUCCu------UCGGGaa-CGCc -5'
25881 5' -59.1 NC_005337.1 + 8401 0.68 0.6468
Target:  5'- cCCCUGa--UCCAGGAGGUCCUggGuCGGc -3'
miRNA:   3'- -GGGGCcagAGGUCCUUCGGGAa-C-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.