Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25881 | 5' | -59.1 | NC_005337.1 | + | 2397 | 0.68 | 0.6468 |
Target: 5'- gCCCGc-CUCCAGGAGGCa---GCGGa -3' miRNA: 3'- gGGGCcaGAGGUCCUUCGggaaCGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 4020 | 0.68 | 0.686494 |
Target: 5'- gUCCCGcaggCUCauggcgGGGAAGCCCacGCGGa -3' miRNA: 3'- -GGGGCca--GAGg-----UCCUUCGGGaaCGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 7509 | 0.74 | 0.354062 |
Target: 5'- -gCCGGUCUCCAGGuaccugaagagcAGGUCCUcgUGCGa -3' miRNA: 3'- ggGGCCAGAGGUCC------------UUCGGGA--ACGCc -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 8401 | 0.68 | 0.6468 |
Target: 5'- cCCCUGa--UCCAGGAGGUCCUggGuCGGc -3' miRNA: 3'- -GGGGCcagAGGUCCUUCGGGAa-C-GCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 13505 | 0.7 | 0.557528 |
Target: 5'- aUCCCGGUCaCCcGGAugauguAGCCCUUGauGa -3' miRNA: 3'- -GGGGCCAGaGGuCCU------UCGGGAACgcC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 15646 | 0.68 | 0.656759 |
Target: 5'- uCCCCGaaCUCCAGGAagAGCUCg-GCGa -3' miRNA: 3'- -GGGGCcaGAGGUCCU--UCGGGaaCGCc -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 19506 | 0.67 | 0.744581 |
Target: 5'- gCCUucaCGGUCUCCgAGGAgAGCaCCgagUGcCGGa -3' miRNA: 3'- -GGG---GCCAGAGG-UCCU-UCG-GGa--AC-GCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 19968 | 0.7 | 0.529389 |
Target: 5'- -aCCGGcgccgcgagagcucCUCCAGGAGGUCCUcgggcagcacgugcUGCGGg -3' miRNA: 3'- ggGGCCa-------------GAGGUCCUUCGGGA--------------ACGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 28319 | 0.67 | 0.735084 |
Target: 5'- gCgCGcGUCgUCCAGGAacagcAGCCCgugGUGGa -3' miRNA: 3'- gGgGC-CAG-AGGUCCU-----UCGGGaa-CGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 32353 | 0.73 | 0.385605 |
Target: 5'- uCCaggaCGGUCUCCAGGAccAGCCggUGCu- -3' miRNA: 3'- -GGg---GCCAGAGGUCCU--UCGGgaACGcc -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 34405 | 0.71 | 0.518849 |
Target: 5'- --gCGGUgCUCCAGGGcaGGCCCgaccgccugGCGGg -3' miRNA: 3'- gggGCCA-GAGGUCCU--UCGGGaa-------CGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 41155 | 0.7 | 0.547771 |
Target: 5'- gUCCGGgaccgUCUCCAGGGgcaGGUCCUUgaugccGCGGa -3' miRNA: 3'- gGGGCC-----AGAGGUCCU---UCGGGAA------CGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 48163 | 0.66 | 0.799303 |
Target: 5'- -gCCGGaCUCCucgcgcgcGGAGGCgCUgcUGCGGg -3' miRNA: 3'- ggGGCCaGAGGu-------CCUUCGgGA--ACGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 52902 | 0.66 | 0.802787 |
Target: 5'- uCCCCGa-CUCCuGGGAgaaggacuucuacguGCCCU-GCGGc -3' miRNA: 3'- -GGGGCcaGAGGuCCUU---------------CGGGAaCGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 59113 | 0.67 | 0.714873 |
Target: 5'- uUCCGGUgcguggaCUUCGGGAAguucuaccuGCCCgUGCGGu -3' miRNA: 3'- gGGGCCA-------GAGGUCCUU---------CGGGaACGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 59398 | 0.7 | 0.577182 |
Target: 5'- uCCUCGGUCgggCgCAGGAagagcaGGCCCUUGaccucgccguuCGGg -3' miRNA: 3'- -GGGGCCAGa--G-GUCCU------UCGGGAAC-----------GCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 59673 | 0.68 | 0.6667 |
Target: 5'- gUCgCGG-CUCCGGGAGGCgCCgaUGCGc -3' miRNA: 3'- -GGgGCCaGAGGUCCUUCG-GGa-ACGCc -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 66057 | 0.68 | 0.686494 |
Target: 5'- aCCCGGaCgccgUCAGGcGGGCCCgcaGCGGc -3' miRNA: 3'- gGGGCCaGa---GGUCC-UUCGGGaa-CGCC- -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 67880 | 0.74 | 0.361775 |
Target: 5'- gCCCGGUgccguagucCUUgGGGAAGCCCUUGUc- -3' miRNA: 3'- gGGGCCA---------GAGgUCCUUCGGGAACGcc -5' |
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25881 | 5' | -59.1 | NC_005337.1 | + | 72562 | 0.71 | 0.509341 |
Target: 5'- gUCCCGG-CUCCAGGAGGagaacuaCCUgaccgUGCGc -3' miRNA: 3'- -GGGGCCaGAGGUCCUUCg------GGA-----ACGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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