miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25883 3' -59.2 NC_005337.1 + 67352 0.66 0.768839
Target:  5'- cACgaugGCGCagcCCAUGACCgaguacaucgugcGCCGCGaGGa -3'
miRNA:   3'- -UGaa--CGCGa--GGUACUGG-------------CGGCGCgCC- -5'
25883 3' -59.2 NC_005337.1 + 133109 0.66 0.768839
Target:  5'- --gUGCGCUCCGUGAacacaucgaGCUGUgauccccGCGGa -3'
miRNA:   3'- ugaACGCGAGGUACUgg-------CGGCG-------CGCC- -5'
25883 3' -59.2 NC_005337.1 + 97975 0.66 0.766055
Target:  5'- --gUGCGCgccauccgcgacaCCGUGGCCGCguuCGCGCa- -3'
miRNA:   3'- ugaACGCGa------------GGUACUGGCG---GCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 71272 0.66 0.760456
Target:  5'- ---cGCGCU-CAUG--CGCCGCGUGGc -3'
miRNA:   3'- ugaaCGCGAgGUACugGCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 119832 0.66 0.760456
Target:  5'- aGCgcgGCGCUcgguacccggcgCCAgcggcGGCaCGUCGCGCGGc -3'
miRNA:   3'- -UGaa-CGCGA------------GGUa----CUG-GCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 96864 0.66 0.760456
Target:  5'- -----gGCUCCGcGACU-CCGCGCGGa -3'
miRNA:   3'- ugaacgCGAGGUaCUGGcGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 56498 0.66 0.760456
Target:  5'- ---cGCGCUCCccaacuCCGCggaccccgaggCGCGCGGg -3'
miRNA:   3'- ugaaCGCGAGGuacu--GGCG-----------GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 51636 0.66 0.760456
Target:  5'- aGCUgcggucgGCGCUCCGcGGUCGCCaGCGCc- -3'
miRNA:   3'- -UGAa------CGCGAGGUaCUGGCGG-CGCGcc -5'
25883 3' -59.2 NC_005337.1 + 5613 0.66 0.760456
Target:  5'- gACgaGCGuCUCgGUgcacGACCgGCCGCGCaGGa -3'
miRNA:   3'- -UGaaCGC-GAGgUA----CUGG-CGGCGCG-CC- -5'
25883 3' -59.2 NC_005337.1 + 62579 0.66 0.754818
Target:  5'- uCUUGUGUcugaacaggaaggccUCUAUGucGCCGCCGUGCa- -3'
miRNA:   3'- uGAACGCG---------------AGGUAC--UGGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 42611 0.66 0.751038
Target:  5'- uGCUaGCGCccgCCAUGugCGgcaCCGCGgUGGu -3'
miRNA:   3'- -UGAaCGCGa--GGUACugGC---GGCGC-GCC- -5'
25883 3' -59.2 NC_005337.1 + 13948 0.66 0.751038
Target:  5'- ---cGUGCUCCAUGGgCGa-GgGCGGg -3'
miRNA:   3'- ugaaCGCGAGGUACUgGCggCgCGCC- -5'
25883 3' -59.2 NC_005337.1 + 132914 0.66 0.751038
Target:  5'- ---cGCGCUCagAUGACgCGa-GCGCGGa -3'
miRNA:   3'- ugaaCGCGAGg-UACUG-GCggCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 101442 0.66 0.751038
Target:  5'- gGCggUGCGCUCCAccgaggagGGgCGCgagUGCGUGGa -3'
miRNA:   3'- -UGa-ACGCGAGGUa-------CUgGCG---GCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 58819 0.66 0.751038
Target:  5'- cGC-UGCGCcagaUCgUcgGGCgCGCCGUGCGGc -3'
miRNA:   3'- -UGaACGCG----AG-GuaCUG-GCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 77001 0.66 0.751038
Target:  5'- ---cGCGCgcgCC--GGCC-CCGCGCGGc -3'
miRNA:   3'- ugaaCGCGa--GGuaCUGGcGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 62525 0.66 0.751038
Target:  5'- --aUGCGCUcgcCCAccgacaggcUGACCGUCGCGUc- -3'
miRNA:   3'- ugaACGCGA---GGU---------ACUGGCGGCGCGcc -5'
25883 3' -59.2 NC_005337.1 + 88480 0.66 0.748193
Target:  5'- aACUccGCGCUcgccaagcugucugCCGUcaugGACagCGCCGCGCGGu -3'
miRNA:   3'- -UGAa-CGCGA--------------GGUA----CUG--GCGGCGCGCC- -5'
25883 3' -59.2 NC_005337.1 + 114086 0.66 0.745339
Target:  5'- cGCUaUGCuucacaacgucaagaGCUUCGUGGCCuCCGCcGCGGc -3'
miRNA:   3'- -UGA-ACG---------------CGAGGUACUGGcGGCG-CGCC- -5'
25883 3' -59.2 NC_005337.1 + 39240 0.66 0.741519
Target:  5'- cGCgcagGCGUUCC-UGcCCGCCGUcccgccguucGCGGu -3'
miRNA:   3'- -UGaa--CGCGAGGuACuGGCGGCG----------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.