miRNA: 3'- cAGACG---------------A--ACCGCCAGU-ACAGGUGCAU- -5'
miRNA: 3'- cAGACGAa------------CCGCCAGU---ACAGGUGCau -5'
miRNA: 3'- caGACGAACCGCC-----AG-UACAGGUGCau -5'
miRNA: 3'- -CAGACGAACCGCCAGUACAGGUGCAU- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 25883 | 5' | -54.6 | NC_005337.1 | + | 112116 | 0.75 | 0.466172 |
|
Target: 5'- uUCUGCaggagcgugaacaggUccUGGCGGUCGuUGUCCGCGUAc -3' miRNA: 3'- cAGACG---------------A--ACCGCCAGU-ACAGGUGCAU- -5' |
|||||||
| 25883 | 5' | -54.6 | NC_005337.1 | + | 110543 | 0.75 | 0.449028 |
|
Target: 5'- uUCUGCUgccgcuccgcggcGGCGGUCAggaUGUCCGCGa- -3' miRNA: 3'- cAGACGAa------------CCGCCAGU---ACAGGUGCau -5' |
|||||||
| 25883 | 5' | -54.6 | NC_005337.1 | + | 75044 | 0.77 | 0.355763 |
|
Target: 5'- -aCUGCUUGGCGGagaggUCgGUGUCCGCGg- -3' miRNA: 3'- caGACGAACCGCC-----AG-UACAGGUGCau -5' |
|||||||
| 25883 | 5' | -54.6 | NC_005337.1 | + | 76084 | 1.06 | 0.00444 |
|
Target: 5'- gGUCUGCUUGGCGGUCAUGUCCACGUAc -3' miRNA: 3'- -CAGACGAACCGCCAGUACAGGUGCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home