miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 3' -61.5 NC_005337.1 + 66093 0.66 0.653078
Target:  5'- gGCgGagGCGCUGuGCGGCgUCUGCGCGc -3'
miRNA:   3'- -CGgCaaCGCGGC-CGUCGaGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 65700 0.66 0.653078
Target:  5'- aGgCGUcgGUGCUGGCcgAGCUCCgCGC-CAu -3'
miRNA:   3'- -CgGCAa-CGCGGCCG--UCGAGG-GCGuGU- -5'
25886 3' -61.5 NC_005337.1 + 69549 0.66 0.653078
Target:  5'- aCCGgcGCGCgGGCuGCU-CgGCGCGg -3'
miRNA:   3'- cGGCaaCGCGgCCGuCGAgGgCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 58832 0.66 0.653078
Target:  5'- cGUCGggcGCGCCGuGCGGCUCaacaGcCACGa -3'
miRNA:   3'- -CGGCaa-CGCGGC-CGUCGAGgg--C-GUGU- -5'
25886 3' -61.5 NC_005337.1 + 39414 0.66 0.653078
Target:  5'- cGCUGUUcgacacGCGCgGGCGcccGCUCgggCCGCGCu -3'
miRNA:   3'- -CGGCAA------CGCGgCCGU---CGAG---GGCGUGu -5'
25886 3' -61.5 NC_005337.1 + 14897 0.66 0.653078
Target:  5'- uGCUGUUggcgcgGCGCCGaugguggaaGCAGCUCUCGUg-- -3'
miRNA:   3'- -CGGCAA------CGCGGC---------CGUCGAGGGCGugu -5'
25886 3' -61.5 NC_005337.1 + 69284 0.66 0.653078
Target:  5'- cGCCGcgcGCGaCgGGCAGUUCgCGCGgGa -3'
miRNA:   3'- -CGGCaa-CGC-GgCCGUCGAGgGCGUgU- -5'
25886 3' -61.5 NC_005337.1 + 68832 0.66 0.653078
Target:  5'- cGCCGUcGCGCCcu-GGCUCCUcCGCGa -3'
miRNA:   3'- -CGGCAaCGCGGccgUCGAGGGcGUGU- -5'
25886 3' -61.5 NC_005337.1 + 2646 0.66 0.653078
Target:  5'- aGCgGaaggugGCGCCGGCcGcCUCCaCGCugAg -3'
miRNA:   3'- -CGgCaa----CGCGGCCGuC-GAGG-GCGugU- -5'
25886 3' -61.5 NC_005337.1 + 42204 0.66 0.65208
Target:  5'- aGCCGcUGCcgguacaGCCGGUcguccgcgAGUUCgCGCACGg -3'
miRNA:   3'- -CGGCaACG-------CGGCCG--------UCGAGgGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 39103 0.66 0.643099
Target:  5'- cGCCGUgGCG-CGGaAGCUCgCGgGCAg -3'
miRNA:   3'- -CGGCAaCGCgGCCgUCGAGgGCgUGU- -5'
25886 3' -61.5 NC_005337.1 + 41376 0.66 0.643099
Target:  5'- uGCCGccGaCGCCGGCAa---CCGCGCGc -3'
miRNA:   3'- -CGGCaaC-GCGGCCGUcgagGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 39258 0.66 0.643099
Target:  5'- cGCCGUccCGCCGuucGCGGUggCCGCGCu -3'
miRNA:   3'- -CGGCAacGCGGC---CGUCGagGGCGUGu -5'
25886 3' -61.5 NC_005337.1 + 38006 0.66 0.643099
Target:  5'- cGCCGggaaCGCCGGCAugGCcaucgUCUGCACGc -3'
miRNA:   3'- -CGGCaac-GCGGCCGU--CGa----GGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 25270 0.66 0.643099
Target:  5'- cGCCaacgcgGCGCUGG-AGUUCgCGCGCAc -3'
miRNA:   3'- -CGGcaa---CGCGGCCgUCGAGgGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 120219 0.66 0.633113
Target:  5'- cGCCGagGCggacagcaucGCCGaGCAGUgcguguacgaaCCCGCACAa -3'
miRNA:   3'- -CGGCaaCG----------CGGC-CGUCGa----------GGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 66513 0.66 0.633113
Target:  5'- aGCCGcUGCaGCCGGCcgagacgcuggAGCUgcgCgCCGCGCc -3'
miRNA:   3'- -CGGCaACG-CGGCCG-----------UCGA---G-GGCGUGu -5'
25886 3' -61.5 NC_005337.1 + 16019 0.66 0.633113
Target:  5'- cGCCGgagugaugaUGCG-CGGCgucuccucgGGCUCCgCGCACu -3'
miRNA:   3'- -CGGCa--------ACGCgGCCG---------UCGAGG-GCGUGu -5'
25886 3' -61.5 NC_005337.1 + 17583 0.66 0.633113
Target:  5'- cGCCaUUGCgGCCGGCucg-CCCGCGg- -3'
miRNA:   3'- -CGGcAACG-CGGCCGucgaGGGCGUgu -5'
25886 3' -61.5 NC_005337.1 + 36551 0.66 0.623126
Target:  5'- gGCUGggcgGCGCCGGCgAGCcaCCC-CACc -3'
miRNA:   3'- -CGGCaa--CGCGGCCG-UCGa-GGGcGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.