miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 3' -61.5 NC_005337.1 + 81238 1.09 0.000693
Target:  5'- gGCCGUUGCGCCGGCAGCUCCCGCACAg -3'
miRNA:   3'- -CGGCAACGCGGCCGUCGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 46461 0.84 0.050663
Target:  5'- cGCgCGgcGCGCCGGCgAGCUCCCGgGCAg -3'
miRNA:   3'- -CG-GCaaCGCGGCCG-UCGAGGGCgUGU- -5'
25886 3' -61.5 NC_005337.1 + 133689 0.82 0.060938
Target:  5'- uGgCGUU-CGCCGGCGGCUUCCGCGCGg -3'
miRNA:   3'- -CgGCAAcGCGGCCGUCGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 133689 0.82 0.060938
Target:  5'- uGgCGUU-CGCCGGCGGCUUCCGCGCGg -3'
miRNA:   3'- -CgGCAAcGCGGCCGUCGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 94737 0.81 0.079176
Target:  5'- cGCCGggGCGCCGGCAGCcacgaCCGCGa- -3'
miRNA:   3'- -CGGCaaCGCGGCCGUCGag---GGCGUgu -5'
25886 3' -61.5 NC_005337.1 + 71282 0.78 0.132356
Target:  5'- cGCCGcgugGCGCUGGUGcGCUUCCGCACGc -3'
miRNA:   3'- -CGGCaa--CGCGGCCGU-CGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 100541 0.77 0.146372
Target:  5'- cGCCa-UGCGCCGGCGGUUCauGCGCAg -3'
miRNA:   3'- -CGGcaACGCGGCCGUCGAGggCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 6546 0.76 0.15776
Target:  5'- aGUCGUUGCGCCGGaAGaCUUCCGCuACGg -3'
miRNA:   3'- -CGGCAACGCGGCCgUC-GAGGGCG-UGU- -5'
25886 3' -61.5 NC_005337.1 + 47878 0.76 0.16579
Target:  5'- cGCCGgacGCGCgcagccgccuggCGGCAuGUUCCCGCACAa -3'
miRNA:   3'- -CGGCaa-CGCG------------GCCGU-CGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 36212 0.76 0.178524
Target:  5'- cGUCGUuuuuUGCGCCGGCcgcggcgcGCUCCCGgACGa -3'
miRNA:   3'- -CGGCA----ACGCGGCCGu-------CGAGGGCgUGU- -5'
25886 3' -61.5 NC_005337.1 + 6734 0.74 0.222044
Target:  5'- -aCGggGCGCCGGCAGgUaCCGUACAu -3'
miRNA:   3'- cgGCaaCGCGGCCGUCgAgGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 127367 0.74 0.227401
Target:  5'- uGCUGc-GCGCCGGCGcGgaCCCGCGCGc -3'
miRNA:   3'- -CGGCaaCGCGGCCGU-CgaGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 133731 0.74 0.232868
Target:  5'- gGCgGUggcggagugGCGCCGGCAGCUggagcgCCUGCGCc -3'
miRNA:   3'- -CGgCAa--------CGCGGCCGUCGA------GGGCGUGu -5'
25886 3' -61.5 NC_005337.1 + 43929 0.74 0.232868
Target:  5'- cGCUGUacGCGaccuucaaCUGGCGGUUCCCGCGCAc -3'
miRNA:   3'- -CGGCAa-CGC--------GGCCGUCGAGGGCGUGU- -5'
25886 3' -61.5 NC_005337.1 + 133731 0.74 0.232868
Target:  5'- gGCgGUggcggagugGCGCCGGCAGCUggagcgCCUGCGCc -3'
miRNA:   3'- -CGgCAa--------CGCGGCCGUCGA------GGGCGUGu -5'
25886 3' -61.5 NC_005337.1 + 88260 0.73 0.244132
Target:  5'- uGCCGgcGCGCCGGCGGgCg-CCGCGgAg -3'
miRNA:   3'- -CGGCaaCGCGGCCGUC-GagGGCGUgU- -5'
25886 3' -61.5 NC_005337.1 + 133119 0.73 0.268016
Target:  5'- gGCCGcucCGCCGGCGcGCUCCC-CGCGg -3'
miRNA:   3'- -CGGCaacGCGGCCGU-CGAGGGcGUGU- -5'
25886 3' -61.5 NC_005337.1 + 131345 0.73 0.280007
Target:  5'- cGCCGUgcGCGUCGGCAcuccggcgacgccGCUCCUGgACGu -3'
miRNA:   3'- -CGGCAa-CGCGGCCGU-------------CGAGGGCgUGU- -5'
25886 3' -61.5 NC_005337.1 + 42416 0.73 0.28065
Target:  5'- cGCUG-UGCGCCGGCuucggcgugAGCUUCCGgGCc -3'
miRNA:   3'- -CGGCaACGCGGCCG---------UCGAGGGCgUGu -5'
25886 3' -61.5 NC_005337.1 + 16115 0.73 0.28065
Target:  5'- cGCCGcgGCGCCgucaaccuccauGGCGGCa-CCGCACAc -3'
miRNA:   3'- -CGGCaaCGCGG------------CCGUCGagGGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.