miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 8867 0.66 0.817693
Target:  5'- ----cGCCGCCG-UGCAuGAcgGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCgAUGUcCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 9352 0.66 0.817693
Target:  5'- ---cUGCUGUCGggguccagggGCAGGGGCAUGCu -3'
miRNA:   3'- aaguACGGCGGCga--------UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 19883 0.66 0.817693
Target:  5'- --gAUGCa-CCGgcACAGGAGCGCGUa -3'
miRNA:   3'- aagUACGgcGGCgaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 116986 0.66 0.817693
Target:  5'- ----cGuuGCCauaGCUGCAacGGGGUACGCu -3'
miRNA:   3'- aaguaCggCGG---CGAUGU--CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 67925 0.66 0.817693
Target:  5'- --aGUGCCGCgguggucgCGCUcCAcGAGCACGUg -3'
miRNA:   3'- aagUACGGCG--------GCGAuGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 53019 0.66 0.817693
Target:  5'- -gCAUGaacCUGCgGCUguGCGGGAGCugccgGCGCa -3'
miRNA:   3'- aaGUAC---GGCGgCGA--UGUCCUCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 96031 0.66 0.817693
Target:  5'- ----cGCgCGCCGCgucucgucagGCAgccGGAGCACGUc -3'
miRNA:   3'- aaguaCG-GCGGCGa---------UGU---CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 29790 0.66 0.817693
Target:  5'- ---cUGUCGCCGCUGCGcGuGCucCGCg -3'
miRNA:   3'- aaguACGGCGGCGAUGUcCuCGu-GCG- -5'
25886 5' -57.4 NC_005337.1 + 58309 0.66 0.816816
Target:  5'- -aCGUGCCGgacaaguCCGUgcucucgaaGCAGGAGUACGa -3'
miRNA:   3'- aaGUACGGC-------GGCGa--------UGUCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 92525 0.66 0.816816
Target:  5'- aUCAUaGCCGCCGa-GCAGcAGCgccaacaGCGCa -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCcUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 115203 0.66 0.815058
Target:  5'- -aCAcGgUGCCGCUGCGGGcgcugcugaagaugGGCGCGg -3'
miRNA:   3'- aaGUaCgGCGGCGAUGUCC--------------UCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 133369 0.66 0.814177
Target:  5'- ----cGCCGCCGCgcucgucgcgcuCGGGcuccugcucGGCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGau----------GUCC---------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133369 0.66 0.814177
Target:  5'- ----cGCCGCCGCgcucgucgcgcuCGGGcuccugcucGGCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGau----------GUCC---------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 131189 0.66 0.808852
Target:  5'- gUCGcugGCCGUCGCcgaggUGCGcGGAGUccGCGCu -3'
miRNA:   3'- aAGUa--CGGCGGCG-----AUGU-CCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 128156 0.66 0.808852
Target:  5'- cUCGgacGCaCGCCGCUGCAcGuGGC-CGCg -3'
miRNA:   3'- aAGUa--CG-GCGGCGAUGU-CcUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 59025 0.66 0.808852
Target:  5'- gUCGUGgCGcCCGCUGguGGA-CGCGa -3'
miRNA:   3'- aAGUACgGC-GGCGAUguCCUcGUGCg -5'
25886 5' -57.4 NC_005337.1 + 78218 0.66 0.808852
Target:  5'- gUCGUGCguguacaGCCGCagcauguCGGuGGGCAUGCg -3'
miRNA:   3'- aAGUACGg------CGGCGau-----GUC-CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22296 0.66 0.808852
Target:  5'- -aCGUGUa-CCGggACAGGAacGCGCGCa -3'
miRNA:   3'- aaGUACGgcGGCgaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 111209 0.66 0.808852
Target:  5'- -gCAcgGCCGCCGCguucc-GGCGCGCg -3'
miRNA:   3'- aaGUa-CGGCGGCGauguccUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 106711 0.66 0.808852
Target:  5'- -aCAaGCUGUCGCUGCcGGAG-ACGUu -3'
miRNA:   3'- aaGUaCGGCGGCGAUGuCCUCgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.