miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 78069 0.66 0.780439
Target:  5'- aUCAUGCCG-CGCUccuuGCGGuaGAGCuuguuccGCGCg -3'
miRNA:   3'- aAGUACGGCgGCGA----UGUC--CUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 78218 0.66 0.808852
Target:  5'- gUCGUGCguguacaGCCGCagcauguCGGuGGGCAUGCg -3'
miRNA:   3'- aAGUACGg------CGGCGau-----GUC-CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 128156 0.66 0.808852
Target:  5'- cUCGgacGCaCGCCGCUGCAcGuGGC-CGCg -3'
miRNA:   3'- aAGUa--CG-GCGGCGAUGU-CcUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 15500 0.66 0.780439
Target:  5'- ----cGCCGCCGCcgGCgucaucuAGGAcgucgcgcaGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCGa-UG-------UCCU---------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 38372 0.66 0.799847
Target:  5'- ----gGCCGCCGUcGCcGcGAGCACGa -3'
miRNA:   3'- aaguaCGGCGGCGaUGuC-CUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 119138 0.66 0.781377
Target:  5'- --aAUGUaCGCUGgUACuGGGGCAUGCu -3'
miRNA:   3'- aagUACG-GCGGCgAUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 98146 0.66 0.790685
Target:  5'- ----cGCaCGCCGCgcacgACAGGGuGCcuGCGCa -3'
miRNA:   3'- aaguaCG-GCGGCGa----UGUCCU-CG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 40465 0.66 0.781377
Target:  5'- ----cGCCGCagaCGaaACuGGAGCACGCg -3'
miRNA:   3'- aaguaCGGCG---GCgaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 39592 0.66 0.790685
Target:  5'- gUUCGUGCCcgaGCCcuucgGCggGCGGGAGCGgaucgucuCGCg -3'
miRNA:   3'- -AAGUACGG---CGG-----CGa-UGUCCUCGU--------GCG- -5'
25886 5' -57.4 NC_005337.1 + 48299 0.66 0.781377
Target:  5'- gUCGcGCCuCCGCaUGCGGugcgcGGGCGCGCu -3'
miRNA:   3'- aAGUaCGGcGGCG-AUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 8867 0.66 0.817693
Target:  5'- ----cGCCGCCG-UGCAuGAcgGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCgAUGUcCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69284 0.66 0.799847
Target:  5'- ----cGCCGCgCGCgACGGGcAGUucGCGCg -3'
miRNA:   3'- aaguaCGGCG-GCGaUGUCC-UCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 65807 0.66 0.771931
Target:  5'- gUCAUGCUGCaGaaGCAGGAGaucccgGCGCu -3'
miRNA:   3'- aAGUACGGCGgCgaUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 39915 0.66 0.799847
Target:  5'- -aCAUGCCGaguaCGCga-AGGuGUACGUg -3'
miRNA:   3'- aaGUACGGCg---GCGaugUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22296 0.66 0.808852
Target:  5'- -aCGUGUa-CCGggACAGGAacGCGCGCa -3'
miRNA:   3'- aaGUACGgcGGCgaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64922 0.66 0.771931
Target:  5'- ----gGCCGgcCCGC-GCGGGAaaGCGCGCg -3'
miRNA:   3'- aaguaCGGC--GGCGaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 121774 0.66 0.799847
Target:  5'- gUCAcGCgGCUGCUGCuGGAcGCcggugcggACGCg -3'
miRNA:   3'- aAGUaCGgCGGCGAUGuCCU-CG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 14406 0.66 0.790685
Target:  5'- ----cGCCGgCGCUGaaccgcgccgcCAGGAGaCACGUg -3'
miRNA:   3'- aaguaCGGCgGCGAU-----------GUCCUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133369 0.66 0.814177
Target:  5'- ----cGCCGCCGCgcucgucgcgcuCGGGcuccugcucGGCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGau----------GUCC---------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 59025 0.66 0.808852
Target:  5'- gUCGUGgCGcCCGCUGguGGA-CGCGa -3'
miRNA:   3'- aAGUACgGC-GGCGAUguCCUcGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.