miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 127363 0.66 0.771931
Target:  5'- aUgAUGCUGCgCGCcgGCGcGGAcccGCGCGCg -3'
miRNA:   3'- aAgUACGGCG-GCGa-UGU-CCU---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78068 0.66 0.781377
Target:  5'- -----uCCGCCacgucCUGCAGGuAGCGCGCg -3'
miRNA:   3'- aaguacGGCGGc----GAUGUCC-UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22296 0.66 0.808852
Target:  5'- -aCGUGUa-CCGggACAGGAacGCGCGCa -3'
miRNA:   3'- aaGUACGgcGGCgaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 121774 0.66 0.799847
Target:  5'- gUCAcGCgGCUGCUGCuGGAcGCcggugcggACGCg -3'
miRNA:   3'- aAGUaCGgCGGCGAUGuCCU-CG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 38372 0.66 0.799847
Target:  5'- ----gGCCGCCGUcGCcGcGAGCACGa -3'
miRNA:   3'- aaguaCGGCGGCGaUGuC-CUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 78069 0.66 0.780439
Target:  5'- aUCAUGCCG-CGCUccuuGCGGuaGAGCuuguuccGCGCg -3'
miRNA:   3'- aAGUACGGCgGCGA----UGUC--CUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 59025 0.66 0.808852
Target:  5'- gUCGUGgCGcCCGCUGguGGA-CGCGa -3'
miRNA:   3'- aAGUACgGC-GGCGAUguCCUcGUGCg -5'
25886 5' -57.4 NC_005337.1 + 48299 0.66 0.781377
Target:  5'- gUCGcGCCuCCGCaUGCGGugcgcGGGCGCGCu -3'
miRNA:   3'- aAGUaCGGcGGCG-AUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 98146 0.66 0.790685
Target:  5'- ----cGCaCGCCGCgcacgACAGGGuGCcuGCGCa -3'
miRNA:   3'- aaguaCG-GCGGCGa----UGUCCU-CG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 69284 0.66 0.799847
Target:  5'- ----cGCCGCgCGCgACGGGcAGUucGCGCg -3'
miRNA:   3'- aaguaCGGCG-GCGaUGUCC-UCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 92525 0.66 0.816816
Target:  5'- aUCAUaGCCGCCGa-GCAGcAGCgccaacaGCGCa -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCcUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 72792 0.66 0.790685
Target:  5'- aUCAacGCgCGCCG--GCAGGAGUACGa -3'
miRNA:   3'- aAGUa-CG-GCGGCgaUGUCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 81812 0.66 0.781377
Target:  5'- cUUCAgcugGCC-CUGCgcCGGGAGCuCGCu -3'
miRNA:   3'- -AAGUa---CGGcGGCGauGUCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 11853 0.66 0.771931
Target:  5'- --uGUGCCGCaucgGCgcggACAGGcgccGCGCGCc -3'
miRNA:   3'- aagUACGGCGg---CGa---UGUCCu---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78218 0.66 0.808852
Target:  5'- gUCGUGCguguacaGCCGCagcauguCGGuGGGCAUGCg -3'
miRNA:   3'- aAGUACGg------CGGCGau-----GUC-CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 67925 0.66 0.817693
Target:  5'- --aGUGCCGCgguggucgCGCUcCAcGAGCACGUg -3'
miRNA:   3'- aagUACGGCG--------GCGAuGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 116986 0.66 0.817693
Target:  5'- ----cGuuGCCauaGCUGCAacGGGGUACGCu -3'
miRNA:   3'- aaguaCggCGG---CGAUGU--CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 23725 0.66 0.781377
Target:  5'- aUCcUGaCCGCCGCcGC-GGAGCG-GCa -3'
miRNA:   3'- aAGuAC-GGCGGCGaUGuCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 56055 0.66 0.803468
Target:  5'- -aCAUGCUGCgGCUguacacGCacgaccucaugaccgAGGAGCGCGa -3'
miRNA:   3'- aaGUACGGCGgCGA------UG---------------UCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 108511 0.66 0.803468
Target:  5'- aUCAUGUaccuggagCGCaCGCUggacggcgcgacgguGCGGG-GCGCGCg -3'
miRNA:   3'- aAGUACG--------GCG-GCGA---------------UGUCCuCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.