Results 61 - 80 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25886 | 5' | -57.4 | NC_005337.1 | + | 133159 | 0.67 | 0.73296 |
Target: 5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3' miRNA: 3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 57262 | 0.67 | 0.73296 |
Target: 5'- gUUCggGCacgggGCCGC-GCGGGgccGGCGCGCg -3' miRNA: 3'- -AAGuaCGg----CGGCGaUGUCC---UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 111389 | 0.67 | 0.729971 |
Target: 5'- --gGUGCCGCuCGCgcgGCAcgucggacaguuucGaGAGCGCGCc -3' miRNA: 3'- aagUACGGCG-GCGa--UGU--------------C-CUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 105476 | 0.67 | 0.753638 |
Target: 5'- gUCGUGCUGCgGCgcaugagcaagaucCGGGAGUucgugGCGCa -3' miRNA: 3'- aAGUACGGCGgCGau------------GUCCUCG-----UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 66505 | 0.67 | 0.716934 |
Target: 5'- cUCGcUGgaGCCGCUGCAgccggccgagacgcuGGAGCuGCGCg -3' miRNA: 3'- aAGU-ACggCGGCGAUGU---------------CCUCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 125268 | 0.67 | 0.712896 |
Target: 5'- aUCGUGCgUGCCcaggACAGGAuGCAUGCc -3' miRNA: 3'- aAGUACG-GCGGcga-UGUCCU-CGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 111025 | 0.67 | 0.712896 |
Target: 5'- -aCGUGCCGCCGUcacgaccuccccUGgAGGAugACGCg -3' miRNA: 3'- aaGUACGGCGGCG------------AUgUCCUcgUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 107863 | 0.67 | 0.722968 |
Target: 5'- aUCGcgGCCGCCGC-----GAGCACGUa -3' miRNA: 3'- aAGUa-CGGCGGCGaugucCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 35826 | 0.67 | 0.736932 |
Target: 5'- -gCAUGCCGCaggccgauCccgacaaguucgugcGCUGCGGGGGCggACGCg -3' miRNA: 3'- aaGUACGGCG--------G---------------CGAUGUCCUCG--UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 62954 | 0.67 | 0.742862 |
Target: 5'- ----cGCCGCCGC-GCGGGucGC-CGCc -3' miRNA: 3'- aaguaCGGCGGCGaUGUCCu-CGuGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 13895 | 0.67 | 0.752664 |
Target: 5'- -aCGUGCCGCacgaGCcgGCAGGcGCGC-Cg -3' miRNA: 3'- aaGUACGGCGg---CGa-UGUCCuCGUGcG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 31225 | 0.67 | 0.73296 |
Target: 5'- --gAUGCCG-CGCUGCAGcAGCAUcaGCa -3' miRNA: 3'- aagUACGGCgGCGAUGUCcUCGUG--CG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 889 | 0.67 | 0.73296 |
Target: 5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3' miRNA: 3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 115360 | 0.67 | 0.722968 |
Target: 5'- -gCGUGcCCGCggaCGUggugGGGAGCACGCa -3' miRNA: 3'- aaGUAC-GGCG---GCGaug-UCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 30387 | 0.67 | 0.722968 |
Target: 5'- -cCAUGUCGCgCGCggcCAGcAGCugGCg -3' miRNA: 3'- aaGUACGGCG-GCGau-GUCcUCGugCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 99649 | 0.67 | 0.721964 |
Target: 5'- -aCGUGCgcggcauCGCCGCgcgGCuGG-GCGCGCc -3' miRNA: 3'- aaGUACG-------GCGGCGa--UGuCCuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 131228 | 0.67 | 0.712896 |
Target: 5'- ----aGCCGCUGCUGCGcugguucGAGuCGCGCa -3' miRNA: 3'- aaguaCGGCGGCGAUGUc------CUC-GUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 68540 | 0.67 | 0.712896 |
Target: 5'- -gCGUGCCG-CGCUAguGacggcgccGGGCGCGCc -3' miRNA: 3'- aaGUACGGCgGCGAUguC--------CUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 50314 | 0.67 | 0.752664 |
Target: 5'- ----cGCCGCCGCUGCccu-GCGCGg -3' miRNA: 3'- aaguaCGGCGGCGAUGuccuCGUGCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 32239 | 0.67 | 0.752664 |
Target: 5'- --gGUGCCGCCGauggagUugGGGAcCACGUa -3' miRNA: 3'- aagUACGGCGGCg-----AugUCCUcGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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