miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 99649 0.67 0.721964
Target:  5'- -aCGUGCgcggcauCGCCGCgcgGCuGG-GCGCGCc -3'
miRNA:   3'- aaGUACG-------GCGGCGa--UGuCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 30387 0.67 0.722968
Target:  5'- -cCAUGUCGCgCGCggcCAGcAGCugGCg -3'
miRNA:   3'- aaGUACGGCG-GCGau-GUCcUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 115360 0.67 0.722968
Target:  5'- -gCGUGcCCGCggaCGUggugGGGAGCACGCa -3'
miRNA:   3'- aaGUAC-GGCG---GCGaug-UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 31225 0.67 0.73296
Target:  5'- --gAUGCCG-CGCUGCAGcAGCAUcaGCa -3'
miRNA:   3'- aagUACGGCgGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 31764 0.67 0.73296
Target:  5'- -cCGUGgCGUCggaGCUGCucgggAGGAGCACGUc -3'
miRNA:   3'- aaGUACgGCGG---CGAUG-----UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 91192 0.67 0.73296
Target:  5'- -cCcgGgCGCCGCgaUGCGGacGGGCGCGCc -3'
miRNA:   3'- aaGuaCgGCGGCG--AUGUC--CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 131228 0.67 0.712896
Target:  5'- ----aGCCGCUGCUGCGcugguucGAGuCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGAUGUc------CUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 62954 0.67 0.742862
Target:  5'- ----cGCCGCCGC-GCGGGucGC-CGCc -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCu-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 68540 0.67 0.712896
Target:  5'- -gCGUGCCG-CGCUAguGacggcgccGGGCGCGCc -3'
miRNA:   3'- aaGUACGGCgGCGAUguC--------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 102170 0.68 0.702753
Target:  5'- -aCAUGCgCGCCGCcauguacaacgUGCuGGAG-ACGCu -3'
miRNA:   3'- aaGUACG-GCGGCG-----------AUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 12268 0.68 0.661663
Target:  5'- gUCGcgGCCGggucgcaccCCGCgcGCAGGAGCucGCGCa -3'
miRNA:   3'- aAGUa-CGGC---------GGCGa-UGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 48004 0.68 0.682293
Target:  5'- -gCGUGgccuggauCCGCgCGCUGC-GGAGCACGa -3'
miRNA:   3'- aaGUAC--------GGCG-GCGAUGuCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 58708 0.68 0.692549
Target:  5'- gUCAUcGCCGUCG--GCAGGuagaugGGCGCGCc -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCC------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 38292 0.68 0.702753
Target:  5'- gUCAaGCa-CCGgUGgAGGGGCGCGCg -3'
miRNA:   3'- aAGUaCGgcGGCgAUgUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 29554 0.68 0.671995
Target:  5'- cUUgAUGCCGCCGCcGCGGcGGCG-GCc -3'
miRNA:   3'- -AAgUACGGCGGCGaUGUCcUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 132578 0.68 0.702753
Target:  5'- -cCGUGUCGCUGUUGCGac-GCGCGCu -3'
miRNA:   3'- aaGUACGGCGGCGAUGUccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 48183 0.68 0.661663
Target:  5'- ----aGgCGCUGCUGCGGGAGC-UGUa -3'
miRNA:   3'- aaguaCgGCGGCGAUGUCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 10827 0.68 0.702753
Target:  5'- -cCGUGCUGgCGCUGCGgcgcGGAGgGCGa -3'
miRNA:   3'- aaGUACGGCgGCGAUGU----CCUCgUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.