Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25886 | 5' | -57.4 | NC_005337.1 | + | 65961 | 0.71 | 0.498428 |
Target: 5'- -gCGUGCCGCC-CUcCucGGGCACGCg -3' miRNA: 3'- aaGUACGGCGGcGAuGucCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 35968 | 0.71 | 0.488707 |
Target: 5'- ----cGCCGCCGCgGCAGGGGguaacaaaaaGCGCa -3' miRNA: 3'- aaguaCGGCGGCGaUGUCCUCg---------UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 133614 | 0.71 | 0.488707 |
Target: 5'- ----cGCUGCUGCUGCAGGAGguCa- -3' miRNA: 3'- aaguaCGGCGGCGAUGUCCUCguGcg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 23909 | 0.71 | 0.484843 |
Target: 5'- gUCGcUGCCGCgCGCccgcgcgcccgcgGCAGGcGCGCGCg -3' miRNA: 3'- aAGU-ACGGCG-GCGa------------UGUCCuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 64365 | 0.71 | 0.479075 |
Target: 5'- -cCGUGuCCaGCgCGC-GCAGGAGCACGUu -3' miRNA: 3'- aaGUAC-GG-CG-GCGaUGUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 69014 | 0.7 | 0.59326 |
Target: 5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3' miRNA: 3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 128724 | 0.7 | 0.578838 |
Target: 5'- -gCGUGUaccgcgaGCCGCU-CuGGAGCGCGUg -3' miRNA: 3'- aaGUACGg------CGGCGAuGuCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 57643 | 0.7 | 0.568583 |
Target: 5'- gUUCAUGCUGgUGCUGCcGG-GCGcCGCg -3' miRNA: 3'- -AAGUACGGCgGCGAUGuCCuCGU-GCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 87449 | 0.7 | 0.558374 |
Target: 5'- gUCuUGCCGUCGCUGgAGauggccAGCGCGCc -3' miRNA: 3'- aAGuACGGCGGCGAUgUCc-----UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 76833 | 0.7 | 0.558374 |
Target: 5'- -gCAUGCuCGCgGUgGCcGGAGCGCGUa -3' miRNA: 3'- aaGUACG-GCGgCGaUGuCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 96560 | 0.7 | 0.568583 |
Target: 5'- --gAUGCCGCUGCaGguGGAcgaccucacGCGCGCg -3' miRNA: 3'- aagUACGGCGGCGaUguCCU---------CGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 108755 | 0.7 | 0.558374 |
Target: 5'- -gCGUGg-GCCGCUGCcuGGAGCGCGUc -3' miRNA: 3'- aaGUACggCGGCGAUGu-CCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 64003 | 0.7 | 0.558374 |
Target: 5'- cUUGUGCCGCgGCUuCcGGcacAGCGCGCa -3' miRNA: 3'- aAGUACGGCGgCGAuGuCC---UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 87801 | 0.7 | 0.548217 |
Target: 5'- ----cGCgGCUGCUGCccGGGAGCuCGCg -3' miRNA: 3'- aaguaCGgCGGCGAUG--UCCUCGuGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 77137 | 0.7 | 0.558374 |
Target: 5'- -gCGUGCCGCCGCc----GAGCAgCGCg -3' miRNA: 3'- aaGUACGGCGGCGaugucCUCGU-GCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 95903 | 0.7 | 0.548217 |
Target: 5'- cUCGUGCuCGCgGCgacgGCGGccGCGCGCg -3' miRNA: 3'- aAGUACG-GCGgCGa---UGUCcuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 116328 | 0.7 | 0.558374 |
Target: 5'- --gGUGCgUGCUGCUGCGGGcGCAgCGCc -3' miRNA: 3'- aagUACG-GCGGCGAUGUCCuCGU-GCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 98468 | 0.7 | 0.538119 |
Target: 5'- -gCAUGCgUG-CGCaagGCAGGGGCGCGCc -3' miRNA: 3'- aaGUACG-GCgGCGa--UGUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 69483 | 0.7 | 0.538119 |
Target: 5'- gUCGUGCCGCCGC-GC-GGAGgACc- -3' miRNA: 3'- aAGUACGGCGGCGaUGuCCUCgUGcg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 38468 | 0.7 | 0.548217 |
Target: 5'- cUUCAUGCgGUgCGCgcCGGGcGCGCGCg -3' miRNA: 3'- -AAGUACGgCG-GCGauGUCCuCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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