Results 81 - 100 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25886 | 5' | -57.4 | NC_005337.1 | + | 36974 | 0.68 | 0.671995 |
Target: 5'- cUUCAUGCCGUCGCUcaugaucuccGCGGucuccAGC-CGCg -3' miRNA: 3'- -AAGUACGGCGGCGA----------UGUCc----UCGuGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 112328 | 0.68 | 0.691526 |
Target: 5'- gUUCAcGCCGaugaccuCCGCgagcucgGC-GGAGCGCGCg -3' miRNA: 3'- -AAGUaCGGC-------GGCGa------UGuCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 22651 | 0.68 | 0.660629 |
Target: 5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3' miRNA: 3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 41592 | 0.68 | 0.651307 |
Target: 5'- ----cGCCGCCGCc-CAGGAaggugaGCACGUc -3' miRNA: 3'- aaguaCGGCGGCGauGUCCU------CGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 69889 | 0.68 | 0.651307 |
Target: 5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3' miRNA: 3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 131011 | 0.68 | 0.692549 |
Target: 5'- -aCGUgGCCGCCGCgcaccgcaacgACaAGGcguGCGCGCg -3' miRNA: 3'- aaGUA-CGGCGGCGa----------UG-UCCu--CGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 105292 | 0.68 | 0.682293 |
Target: 5'- ----gGCCGCCGCUgcccGCAGucGCuGCGCa -3' miRNA: 3'- aaguaCGGCGGCGA----UGUCcuCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 129770 | 0.68 | 0.682293 |
Target: 5'- -aCGUGUucgggaacaCGCCGCUGCAcGuGCugGCg -3' miRNA: 3'- aaGUACG---------GCGGCGAUGUcCuCGugCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 85405 | 0.68 | 0.671995 |
Target: 5'- ----gGCCGCCGg-GCGGGGaCGCGCa -3' miRNA: 3'- aaguaCGGCGGCgaUGUCCUcGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 29554 | 0.68 | 0.671995 |
Target: 5'- cUUgAUGCCGCCGCcGCGGcGGCG-GCc -3' miRNA: 3'- -AAgUACGGCGGCGaUGUCcUCGUgCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 28945 | 0.68 | 0.682293 |
Target: 5'- cUCccGCCGCCGCacgugcuggGCAacuGGGGCguGCGCa -3' miRNA: 3'- aAGuaCGGCGGCGa--------UGU---CCUCG--UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 48183 | 0.68 | 0.661663 |
Target: 5'- ----aGgCGCUGCUGCGGGAGC-UGUa -3' miRNA: 3'- aaguaCgGCGGCGAUGUCCUCGuGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 9001 | 0.68 | 0.651307 |
Target: 5'- -cCGUGCCGggGCUGCAGcgcauGAGUACGUg -3' miRNA: 3'- aaGUACGGCggCGAUGUC-----CUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 12268 | 0.68 | 0.661663 |
Target: 5'- gUCGcgGCCGggucgcaccCCGCgcGCAGGAGCucGCGCa -3' miRNA: 3'- aAGUa-CGGC---------GGCGa-UGUCCUCG--UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 132578 | 0.68 | 0.702753 |
Target: 5'- -cCGUGUCGCUGUUGCGac-GCGCGCu -3' miRNA: 3'- aaGUACGGCGGCGAUGUccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 38292 | 0.68 | 0.702753 |
Target: 5'- gUCAaGCa-CCGgUGgAGGGGCGCGCg -3' miRNA: 3'- aAGUaCGgcGGCgAUgUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 99432 | 0.68 | 0.686401 |
Target: 5'- ----cGCCGCCGCauauaugccccaucaUGCGGGAGauagagGCGCu -3' miRNA: 3'- aaguaCGGCGGCG---------------AUGUCCUCg-----UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 48004 | 0.68 | 0.682293 |
Target: 5'- -gCGUGgccuggauCCGCgCGCUGC-GGAGCACGa -3' miRNA: 3'- aaGUAC--------GGCG-GCGAUGuCCUCGUGCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 131165 | 0.68 | 0.682293 |
Target: 5'- -aCAcGCUGCUGCUGCugauGCGCGCg -3' miRNA: 3'- aaGUaCGGCGGCGAUGuccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 58708 | 0.68 | 0.692549 |
Target: 5'- gUCAUcGCCGUCG--GCAGGuagaugGGCGCGCc -3' miRNA: 3'- aAGUA-CGGCGGCgaUGUCC------UCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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