miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 81272 1.1 0.00135
Target:  5'- gUUCAUGCCGCCGCUACAGGAGCACGCg -3'
miRNA:   3'- -AAGUACGGCGGCGAUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 56297 0.81 0.136
Target:  5'- gUCAUGCgGCCGCUgcucgagaucucGCAGGAGCGCu- -3'
miRNA:   3'- aAGUACGgCGGCGA------------UGUCCUCGUGcg -5'
25886 5' -57.4 NC_005337.1 + 30356 0.79 0.185425
Target:  5'- ----aGCC-CCGCggACAGGAGCACGCg -3'
miRNA:   3'- aaguaCGGcGGCGa-UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 1798 0.77 0.220551
Target:  5'- cUCcUGCCGCCGC-ACGGGAacccucuuugucaGCGCGCu -3'
miRNA:   3'- aAGuACGGCGGCGaUGUCCU-------------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 42486 0.77 0.238103
Target:  5'- ----cGCCGCCGCcgu-GGAGCGCGCg -3'
miRNA:   3'- aaguaCGGCGGCGauguCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 103527 0.76 0.282029
Target:  5'- -gCAcGCUGCCGCccgAGGAGCGCGCg -3'
miRNA:   3'- aaGUaCGGCGGCGaugUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 14429 0.75 0.295707
Target:  5'- -aCGUGCCGCCGCUGgcgcCGGGuaccgAGCGcCGCg -3'
miRNA:   3'- aaGUACGGCGGCGAU----GUCC-----UCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 66131 0.75 0.302737
Target:  5'- ----cGCCGcCCGCUAgGGGcGCGCGCg -3'
miRNA:   3'- aaguaCGGC-GGCGAUgUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 96117 0.75 0.317182
Target:  5'- -aCAUGCgGCCGC-GCAGGAuGC-CGCg -3'
miRNA:   3'- aaGUACGgCGGCGaUGUCCU-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 74161 0.75 0.324597
Target:  5'- gUCA--CCGCCguGCUGCGGGAgGCGCGCu -3'
miRNA:   3'- aAGUacGGCGG--CGAUGUCCU-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 36602 0.74 0.347608
Target:  5'- -aCGUGCaCGcCCGCgGCcuGGAGCGCGCg -3'
miRNA:   3'- aaGUACG-GC-GGCGaUGu-CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 2068 0.74 0.363586
Target:  5'- -cCGUGCCGCaGCaGCAGGcgcacggugucGGCGCGCg -3'
miRNA:   3'- aaGUACGGCGgCGaUGUCC-----------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 13063 0.74 0.363586
Target:  5'- -cCGUGUCGCUGCUGCGcGcGGGCGCGg -3'
miRNA:   3'- aaGUACGGCGGCGAUGU-C-CUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 114110 0.74 0.363586
Target:  5'- cUUCGUGgccuCCGCCGCggccugcgGCAgcguGGAGCGCGCc -3'
miRNA:   3'- -AAGUAC----GGCGGCGa-------UGU----CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 73338 0.73 0.405702
Target:  5'- -gCAUGCCGgCGCgGCAGuGGCGCGUc -3'
miRNA:   3'- aaGUACGGCgGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 14923 0.73 0.405702
Target:  5'- --gAUGCUGCCGCUG-GGGAGCcaggccuuGCGCa -3'
miRNA:   3'- aagUACGGCGGCGAUgUCCUCG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 127566 0.73 0.414487
Target:  5'- gUCcgGCUGCUGCUGgAGGcGgGCGCa -3'
miRNA:   3'- aAGuaCGGCGGCGAUgUCCuCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 52097 0.72 0.423388
Target:  5'- -cCcgGCgGCCGCgUGCAGGuGCGCGa -3'
miRNA:   3'- aaGuaCGgCGGCG-AUGUCCuCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.