miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 5965 0.72 0.423388
Target:  5'- cUCGcGCCGCgCGCgagcagACGGGccaGGCGCGCg -3'
miRNA:   3'- aAGUaCGGCG-GCGa-----UGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 52097 0.72 0.423388
Target:  5'- -cCcgGCgGCCGCgUGCAGGuGCGCGa -3'
miRNA:   3'- aaGuaCGgCGGCG-AUGUCCuCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 54874 0.72 0.432401
Target:  5'- --gAUGCCgcGCCGCcGCGGGAGCA-GCu -3'
miRNA:   3'- aagUACGG--CGGCGaUGUCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 123295 0.72 0.432401
Target:  5'- -cCGUGCCGCacgCGCUGCGcGGAuCGCGCc -3'
miRNA:   3'- aaGUACGGCG---GCGAUGU-CCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 122084 0.72 0.45076
Target:  5'- --gGUGUCGUCGCUGCAGGugGGCAacaugaGCa -3'
miRNA:   3'- aagUACGGCGGCGAUGUCC--UCGUg-----CG- -5'
25886 5' -57.4 NC_005337.1 + 54103 0.72 0.460098
Target:  5'- -gCGUGUacgggCGCUGCUACGuGGAGCGCGa -3'
miRNA:   3'- aaGUACG-----GCGGCGAUGU-CCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 76056 0.72 0.469537
Target:  5'- -cCAUGaCCGCCGC-GCGGcGGUACGCc -3'
miRNA:   3'- aaGUAC-GGCGGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64365 0.71 0.479075
Target:  5'- -cCGUGuCCaGCgCGC-GCAGGAGCACGUu -3'
miRNA:   3'- aaGUAC-GG-CG-GCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75013 0.71 0.479075
Target:  5'- ----gGCCGCCGCUgacgcGCAccguGGGGCugGCc -3'
miRNA:   3'- aaguaCGGCGGCGA-----UGU----CCUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 23909 0.71 0.484843
Target:  5'- gUCGcUGCCGCgCGCccgcgcgcccgcgGCAGGcGCGCGCg -3'
miRNA:   3'- aAGU-ACGGCG-GCGa------------UGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 35968 0.71 0.488707
Target:  5'- ----cGCCGCCGCgGCAGGGGguaacaaaaaGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCUCg---------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 5423 0.71 0.498428
Target:  5'- gUUcgGCCGUgGUcagGCagAGGAGCACGCg -3'
miRNA:   3'- aAGuaCGGCGgCGa--UG--UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65335 0.71 0.498428
Target:  5'- --gGUGCCGCCGCgcgggUACGGGucgauGC-CGCa -3'
miRNA:   3'- aagUACGGCGGCG-----AUGUCCu----CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 65961 0.71 0.498428
Target:  5'- -gCGUGCCGCC-CUcCucGGGCACGCg -3'
miRNA:   3'- aaGUACGGCGGcGAuGucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 54081 0.71 0.508235
Target:  5'- cUUCA-GCgC-CCGCgGCAGGAGCGCGUc -3'
miRNA:   3'- -AAGUaCG-GcGGCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 6894 0.71 0.518123
Target:  5'- -cCAUGUCGCgCGCgcGCGGGuccgcgccGGCGCGCa -3'
miRNA:   3'- aaGUACGGCG-GCGa-UGUCC--------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 123583 0.71 0.518123
Target:  5'- --aGUGCCGCUGCUGCGagcugcGGccGCACGUg -3'
miRNA:   3'- aagUACGGCGGCGAUGU------CCu-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 130169 0.71 0.518123
Target:  5'- uUUCGgagGCCGUgCGC-GC-GGAGCACGCg -3'
miRNA:   3'- -AAGUa--CGGCG-GCGaUGuCCUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.