miRNA display CGI


Results 61 - 80 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 65702 0.7 0.578838
Target:  5'- gUUgGUGCacaGCCGCacgcGguGGGGCGCGCc -3'
miRNA:   3'- -AAgUACGg--CGGCGa---UguCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 104613 0.7 0.578838
Target:  5'- ----cGgCGCCaCcGCGGGAGCACGCg -3'
miRNA:   3'- aaguaCgGCGGcGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 44645 0.7 0.589132
Target:  5'- aUCGUG-CGCCGCaGCGGGcGCuACGUg -3'
miRNA:   3'- aAGUACgGCGGCGaUGUCCuCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 69014 0.7 0.59326
Target:  5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3'
miRNA:   3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 124983 0.69 0.599459
Target:  5'- ----cGCCGCCaGCUACugccGGAGCAC-Ca -3'
miRNA:   3'- aaguaCGGCGG-CGAUGu---CCUCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 132629 0.69 0.599459
Target:  5'- -cCAaGCuCGUCGCcGCGGGcGCGCGCa -3'
miRNA:   3'- aaGUaCG-GCGGCGaUGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75397 0.69 0.60981
Target:  5'- gUCuugGCCGCgcggaUGCUGCGGacggcgcgcGAGCGCGCg -3'
miRNA:   3'- aAGua-CGGCG-----GCGAUGUC---------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64328 0.69 0.60981
Target:  5'- gUUCAUG-CGCCGCUuCGGGAucCGCGUg -3'
miRNA:   3'- -AAGUACgGCGGCGAuGUCCUc-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 25714 0.69 0.620179
Target:  5'- gUCcgGCCgcGCCGCcagcguCAGGcGCGCGCc -3'
miRNA:   3'- aAGuaCGG--CGGCGau----GUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 117628 0.69 0.620179
Target:  5'- -aCcgGCCGCCGCgucaccgccgUGguGGAGCGCu- -3'
miRNA:   3'- aaGuaCGGCGGCG----------AUguCCUCGUGcg -5'
25886 5' -57.4 NC_005337.1 + 33176 0.69 0.624329
Target:  5'- uUUUAUGCC-CCGCgccggACGGGcccucccgacggcggGGCGCGCc -3'
miRNA:   3'- -AAGUACGGcGGCGa----UGUCC---------------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65105 0.69 0.630556
Target:  5'- -aCGUGCUugGCgaugUGCUGCAGcAGCACGCg -3'
miRNA:   3'- aaGUACGG--CG----GCGAUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 83205 0.69 0.630556
Target:  5'- gUCAUGCgGUCGacggGCAuGAGCACGUu -3'
miRNA:   3'- aAGUACGgCGGCga--UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 35028 0.69 0.640935
Target:  5'- ----cGUCGCCGUccGCGGcGAGCGCGUg -3'
miRNA:   3'- aaguaCGGCGGCGa-UGUC-CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 88149 0.69 0.645085
Target:  5'- cUgGUGCCGCCcgaccaggacgaccaGCUGCGGGGaCACGg -3'
miRNA:   3'- aAgUACGGCGG---------------CGAUGUCCUcGUGCg -5'
25886 5' -57.4 NC_005337.1 + 69889 0.68 0.651307
Target:  5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 41592 0.68 0.651307
Target:  5'- ----cGCCGCCGCc-CAGGAaggugaGCACGUc -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCU------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 9001 0.68 0.651307
Target:  5'- -cCGUGCCGggGCUGCAGcgcauGAGUACGUg -3'
miRNA:   3'- aaGUACGGCggCGAUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22651 0.68 0.660629
Target:  5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3'
miRNA:   3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5'
25886 5' -57.4 NC_005337.1 + 48183 0.68 0.661663
Target:  5'- ----aGgCGCUGCUGCGGGAGC-UGUa -3'
miRNA:   3'- aaguaCgGCGGCGAUGUCCUCGuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.