miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 108511 0.66 0.803468
Target:  5'- aUCAUGUaccuggagCGCaCGCUggacggcgcgacgguGCGGG-GCGCGCg -3'
miRNA:   3'- aAGUACG--------GCG-GCGA---------------UGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 56055 0.66 0.803468
Target:  5'- -aCAUGCUGCgGCUguacacGCacgaccucaugaccgAGGAGCGCGa -3'
miRNA:   3'- aaGUACGGCGgCGA------UG---------------UCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 131875 0.66 0.799847
Target:  5'- gUCGU-CCGCUGCcuccUGgAGGcgGGCGCGCa -3'
miRNA:   3'- aAGUAcGGCGGCG----AUgUCC--UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 124792 0.66 0.799847
Target:  5'- gUCAUcGCCG-CGCUggAguGGGGC-CGCa -3'
miRNA:   3'- aAGUA-CGGCgGCGA--UguCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 69284 0.66 0.799847
Target:  5'- ----cGCCGCgCGCgACGGGcAGUucGCGCg -3'
miRNA:   3'- aaguaCGGCG-GCGaUGUCC-UCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 39915 0.66 0.799847
Target:  5'- -aCAUGCCGaguaCGCga-AGGuGUACGUg -3'
miRNA:   3'- aaGUACGGCg---GCGaugUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 38372 0.66 0.799847
Target:  5'- ----gGCCGCCGUcGCcGcGAGCACGa -3'
miRNA:   3'- aaguaCGGCGGCGaUGuC-CUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 82120 0.66 0.799847
Target:  5'- ----aGCCG-CGCUggcGCAuGAGCGCGCg -3'
miRNA:   3'- aaguaCGGCgGCGA---UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 121774 0.66 0.799847
Target:  5'- gUCAcGCgGCUGCUGCuGGAcGCcggugcggACGCg -3'
miRNA:   3'- aAGUaCGgCGGCGAUGuCCU-CG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 39592 0.66 0.790685
Target:  5'- gUUCGUGCCcgaGCCcuucgGCggGCGGGAGCGgaucgucuCGCg -3'
miRNA:   3'- -AAGUACGG---CGG-----CGa-UGUCCUCGU--------GCG- -5'
25886 5' -57.4 NC_005337.1 + 98146 0.66 0.790685
Target:  5'- ----cGCaCGCCGCgcacgACAGGGuGCcuGCGCa -3'
miRNA:   3'- aaguaCG-GCGGCGa----UGUCCU-CG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 14406 0.66 0.790685
Target:  5'- ----cGCCGgCGCUGaaccgcgccgcCAGGAGaCACGUg -3'
miRNA:   3'- aaguaCGGCgGCGAU-----------GUCCUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 72792 0.66 0.790685
Target:  5'- aUCAacGCgCGCCG--GCAGGAGUACGa -3'
miRNA:   3'- aAGUa-CG-GCGGCgaUGUCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 114286 0.66 0.790685
Target:  5'- -aCGUGCUGCCcgaggaccucCUGgAGGAGCucuCGCg -3'
miRNA:   3'- aaGUACGGCGGc---------GAUgUCCUCGu--GCG- -5'
25886 5' -57.4 NC_005337.1 + 58598 0.66 0.787908
Target:  5'- --gAUGCUGCUGCUGuacuucgcggccuuCGGGAucucGCACGUg -3'
miRNA:   3'- aagUACGGCGGCGAU--------------GUCCU----CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78128 0.66 0.781377
Target:  5'- gUCGgccuUGCCGCCccGCUGCAcgccGcGCACGCu -3'
miRNA:   3'- aAGU----ACGGCGG--CGAUGUc---CuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78068 0.66 0.781377
Target:  5'- -----uCCGCCacgucCUGCAGGuAGCGCGCg -3'
miRNA:   3'- aaguacGGCGGc----GAUGUCC-UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 40465 0.66 0.781377
Target:  5'- ----cGCCGCagaCGaaACuGGAGCACGCg -3'
miRNA:   3'- aaguaCGGCG---GCgaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 48299 0.66 0.781377
Target:  5'- gUCGcGCCuCCGCaUGCGGugcgcGGGCGCGCu -3'
miRNA:   3'- aAGUaCGGcGGCG-AUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 23725 0.66 0.781377
Target:  5'- aUCcUGaCCGCCGCcGC-GGAGCG-GCa -3'
miRNA:   3'- aAGuAC-GGCGGCGaUGuCCUCGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.