miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 78128 0.66 0.781377
Target:  5'- gUCGgccuUGCCGCCccGCUGCAcgccGcGCACGCu -3'
miRNA:   3'- aAGU----ACGGCGG--CGAUGUc---CuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 119138 0.66 0.781377
Target:  5'- --aAUGUaCGCUGgUACuGGGGCAUGCu -3'
miRNA:   3'- aagUACG-GCGGCgAUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 15500 0.66 0.780439
Target:  5'- ----cGCCGCCGCcgGCgucaucuAGGAcgucgcgcaGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCGa-UG-------UCCU---------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78069 0.66 0.780439
Target:  5'- aUCAUGCCG-CGCUccuuGCGGuaGAGCuuguuccGCGCg -3'
miRNA:   3'- aAGUACGGCgGCGA----UGUC--CUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 64922 0.66 0.771931
Target:  5'- ----gGCCGgcCCGC-GCGGGAaaGCGCGCg -3'
miRNA:   3'- aaguaCGGC--GGCGaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 11853 0.66 0.771931
Target:  5'- --uGUGCCGCaucgGCgcggACAGGcgccGCGCGCc -3'
miRNA:   3'- aagUACGGCGg---CGa---UGUCCu---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 127363 0.66 0.771931
Target:  5'- aUgAUGCUGCgCGCcgGCGcGGAcccGCGCGCg -3'
miRNA:   3'- aAgUACGGCG-GCGa-UGU-CCU---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65807 0.66 0.771931
Target:  5'- gUCAUGCUGCaGaaGCAGGAGaucccgGCGCu -3'
miRNA:   3'- aAGUACGGCGgCgaUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 20095 0.67 0.762357
Target:  5'- --gAUGCCGuCCGCcauCAGcgaGAGCGCGUc -3'
miRNA:   3'- aagUACGGC-GGCGau-GUC---CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 44216 0.67 0.762357
Target:  5'- ----gGCCGCCGCggaGCGGGcgAGCGC-Cg -3'
miRNA:   3'- aaguaCGGCGGCGa--UGUCC--UCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 68480 0.67 0.762357
Target:  5'- ----cGCCGCCGCacCGGGcGcCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCuC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 83897 0.67 0.762357
Target:  5'- ---uUGuCCGCCgGgUACGGGGGCgGCGCc -3'
miRNA:   3'- aaguAC-GGCGG-CgAUGUCCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 133091 0.67 0.761393
Target:  5'- -cCGUGCCG-CGCUcgcgcaccgccuaGCGGGccgcuccgccGGCGCGCu -3'
miRNA:   3'- aaGUACGGCgGCGA-------------UGUCC----------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 60939 0.67 0.761393
Target:  5'- ----cGCCacuGCCGCgccgGCAugcgcauGGGGCGCGCg -3'
miRNA:   3'- aaguaCGG---CGGCGa---UGU-------CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 105476 0.67 0.753638
Target:  5'- gUCGUGCUGCgGCgcaugagcaagaucCGGGAGUucgugGCGCa -3'
miRNA:   3'- aAGUACGGCGgCGau------------GUCCUCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 13895 0.67 0.752664
Target:  5'- -aCGUGCCGCacgaGCcgGCAGGcGCGC-Cg -3'
miRNA:   3'- aaGUACGGCGg---CGa-UGUCCuCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 32239 0.67 0.752664
Target:  5'- --gGUGCCGCCGauggagUugGGGAcCACGUa -3'
miRNA:   3'- aagUACGGCGGCg-----AugUCCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 39656 0.67 0.752664
Target:  5'- ----cGCgGCCGCgu--GGGGCGCGUg -3'
miRNA:   3'- aaguaCGgCGGCGauguCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 70273 0.67 0.752664
Target:  5'- --uGUGCCggaaGCCGCgGCAcaAGCACGCg -3'
miRNA:   3'- aagUACGG----CGGCGaUGUccUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 40840 0.67 0.752664
Target:  5'- -gCAUGa-GCCGC-ACGGGA-CACGCg -3'
miRNA:   3'- aaGUACggCGGCGaUGUCCUcGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.