miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 50314 0.67 0.752664
Target:  5'- ----cGCCGCCGCUGCccu-GCGCGg -3'
miRNA:   3'- aaguaCGGCGGCGAUGuccuCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 93401 0.67 0.742862
Target:  5'- -cCAggacgGCCGCCcuCUGCaccGGGGGCACGg -3'
miRNA:   3'- aaGUa----CGGCGGc-GAUG---UCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 2803 0.67 0.742862
Target:  5'- -gCAUGUgcacuaggCGCUGCUGCAGGAcGuCACGg -3'
miRNA:   3'- aaGUACG--------GCGGCGAUGUCCU-C-GUGCg -5'
25886 5' -57.4 NC_005337.1 + 123673 0.67 0.742862
Target:  5'- ----cGCCGCCGCUcccccgcgGCGGGAccggGCucguCGCg -3'
miRNA:   3'- aaguaCGGCGGCGA--------UGUCCU----CGu---GCG- -5'
25886 5' -57.4 NC_005337.1 + 110356 0.67 0.742862
Target:  5'- ----cGCCuGCCGCgggcGCGcGGGCGCGCg -3'
miRNA:   3'- aaguaCGG-CGGCGa---UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 91779 0.67 0.742862
Target:  5'- -aCGU-CCGCaGCUuCAGGAGCucGCGCg -3'
miRNA:   3'- aaGUAcGGCGgCGAuGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 42534 0.67 0.742862
Target:  5'- gUUCccGCCGgacgCGCUGCGGGcGCugGUg -3'
miRNA:   3'- -AAGuaCGGCg---GCGAUGUCCuCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 100874 0.67 0.742862
Target:  5'- -aCGgcgGCCGCCagaGCUACuucgcGGGGCgGCGCu -3'
miRNA:   3'- aaGUa--CGGCGG---CGAUGu----CCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 62954 0.67 0.742862
Target:  5'- ----cGCCGCCGC-GCGGGucGC-CGCc -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCu-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 35826 0.67 0.736932
Target:  5'- -gCAUGCCGCaggccgauCccgacaaguucgugcGCUGCGGGGGCggACGCg -3'
miRNA:   3'- aaGUACGGCG--------G---------------CGAUGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 10432 0.67 0.73296
Target:  5'- -cCAUGCaCGCCGCgaacgccgggAC-GGAGC-CGCc -3'
miRNA:   3'- aaGUACG-GCGGCGa---------UGuCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 57262 0.67 0.73296
Target:  5'- gUUCggGCacgggGCCGC-GCGGGgccGGCGCGCg -3'
miRNA:   3'- -AAGuaCGg----CGGCGaUGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 31225 0.67 0.73296
Target:  5'- --gAUGCCG-CGCUGCAGcAGCAUcaGCa -3'
miRNA:   3'- aagUACGGCgGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 31764 0.67 0.73296
Target:  5'- -cCGUGgCGUCggaGCUGCucgggAGGAGCACGUc -3'
miRNA:   3'- aaGUACgGCGG---CGAUG-----UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 91192 0.67 0.73296
Target:  5'- -cCcgGgCGCCGCgaUGCGGacGGGCGCGCc -3'
miRNA:   3'- aaGuaCgGCGGCG--AUGUC--CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 111389 0.67 0.729971
Target:  5'- --gGUGCCGCuCGCgcgGCAcgucggacaguuucGaGAGCGCGCc -3'
miRNA:   3'- aagUACGGCG-GCGa--UGU--------------C-CUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.