miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 115360 0.67 0.722968
Target:  5'- -gCGUGcCCGCggaCGUggugGGGAGCACGCa -3'
miRNA:   3'- aaGUAC-GGCG---GCGaug-UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 107863 0.67 0.722968
Target:  5'- aUCGcgGCCGCCGC-----GAGCACGUa -3'
miRNA:   3'- aAGUa-CGGCGGCGaugucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 30387 0.67 0.722968
Target:  5'- -cCAUGUCGCgCGCggcCAGcAGCugGCg -3'
miRNA:   3'- aaGUACGGCG-GCGau-GUCcUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 99649 0.67 0.721964
Target:  5'- -aCGUGCgcggcauCGCCGCgcgGCuGG-GCGCGCc -3'
miRNA:   3'- aaGUACG-------GCGGCGa--UGuCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 66505 0.67 0.716934
Target:  5'- cUCGcUGgaGCCGCUGCAgccggccgagacgcuGGAGCuGCGCg -3'
miRNA:   3'- aAGU-ACggCGGCGAUGU---------------CCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 4573 0.67 0.712896
Target:  5'- aUC-UGCUGCCGCgggcGCGGcGAcuGCGCGUg -3'
miRNA:   3'- aAGuACGGCGGCGa---UGUC-CU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 131228 0.67 0.712896
Target:  5'- ----aGCCGCUGCUGCGcugguucGAGuCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGAUGUc------CUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 111025 0.67 0.712896
Target:  5'- -aCGUGCCGCCGUcacgaccuccccUGgAGGAugACGCg -3'
miRNA:   3'- aaGUACGGCGGCG------------AUgUCCUcgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 125268 0.67 0.712896
Target:  5'- aUCGUGCgUGCCcaggACAGGAuGCAUGCc -3'
miRNA:   3'- aAGUACG-GCGGcga-UGUCCU-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 106548 0.67 0.712896
Target:  5'- gUCGUGCgcaagaGCgCGCUGCGGGAGaucgUGCa -3'
miRNA:   3'- aAGUACGg-----CG-GCGAUGUCCUCgu--GCG- -5'
25886 5' -57.4 NC_005337.1 + 68540 0.67 0.712896
Target:  5'- -gCGUGCCG-CGCUAguGacggcgccGGGCGCGCc -3'
miRNA:   3'- aaGUACGGCgGCGAUguC--------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 38292 0.68 0.702753
Target:  5'- gUCAaGCa-CCGgUGgAGGGGCGCGCg -3'
miRNA:   3'- aAGUaCGgcGGCgAUgUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 10827 0.68 0.702753
Target:  5'- -cCGUGCUGgCGCUGCGgcgcGGAGgGCGa -3'
miRNA:   3'- aaGUACGGCgGCGAUGU----CCUCgUGCg -5'
25886 5' -57.4 NC_005337.1 + 132578 0.68 0.702753
Target:  5'- -cCGUGUCGCUGUUGCGac-GCGCGCu -3'
miRNA:   3'- aaGUACGGCGGCGAUGUccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65526 0.68 0.702753
Target:  5'- --gGUGCgGCCGgUGCuGGAG-GCGCa -3'
miRNA:   3'- aagUACGgCGGCgAUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 102170 0.68 0.702753
Target:  5'- -aCAUGCgCGCCGCcauguacaacgUGCuGGAG-ACGCu -3'
miRNA:   3'- aaGUACG-GCGGCG-----------AUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132313 0.68 0.692549
Target:  5'- gUCcgGCUGCuCGCUgacGCGGGcAGCgacauGCGCa -3'
miRNA:   3'- aAGuaCGGCG-GCGA---UGUCC-UCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 131011 0.68 0.692549
Target:  5'- -aCGUgGCCGCCGCgcaccgcaacgACaAGGcguGCGCGCg -3'
miRNA:   3'- aaGUA-CGGCGGCGa----------UG-UCCu--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 58708 0.68 0.692549
Target:  5'- gUCAUcGCCGUCG--GCAGGuagaugGGCGCGCc -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCC------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 105100 0.68 0.692549
Target:  5'- ----cGCCGCCGCgucuCcGGAGCugGa -3'
miRNA:   3'- aaguaCGGCGGCGau--GuCCUCGugCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.