miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 112328 0.68 0.691526
Target:  5'- gUUCAcGCCGaugaccuCCGCgagcucgGC-GGAGCGCGCg -3'
miRNA:   3'- -AAGUaCGGC-------GGCGa------UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 99432 0.68 0.686401
Target:  5'- ----cGCCGCCGCauauaugccccaucaUGCGGGAGauagagGCGCu -3'
miRNA:   3'- aaguaCGGCGGCG---------------AUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 28945 0.68 0.682293
Target:  5'- cUCccGCCGCCGCacgugcuggGCAacuGGGGCguGCGCa -3'
miRNA:   3'- aAGuaCGGCGGCGa--------UGU---CCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 105292 0.68 0.682293
Target:  5'- ----gGCCGCCGCUgcccGCAGucGCuGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGA----UGUCcuCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 129770 0.68 0.682293
Target:  5'- -aCGUGUucgggaacaCGCCGCUGCAcGuGCugGCg -3'
miRNA:   3'- aaGUACG---------GCGGCGAUGUcCuCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 48004 0.68 0.682293
Target:  5'- -gCGUGgccuggauCCGCgCGCUGC-GGAGCACGa -3'
miRNA:   3'- aaGUAC--------GGCG-GCGAUGuCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 131165 0.68 0.682293
Target:  5'- -aCAcGCUGCUGCUGCugauGCGCGCg -3'
miRNA:   3'- aaGUaCGGCGGCGAUGuccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 39201 0.68 0.671995
Target:  5'- aUCccGCCuUCGUgcacaucgGCGGGGGCACGCu -3'
miRNA:   3'- aAGuaCGGcGGCGa-------UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 39273 0.68 0.671995
Target:  5'- ----aGCCGCCGCUgucGCGcaAGUACGCg -3'
miRNA:   3'- aaguaCGGCGGCGA---UGUccUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 59731 0.68 0.671995
Target:  5'- aUCAcG-CGCCGCgcgGC-GGAGCGCGUc -3'
miRNA:   3'- aAGUaCgGCGGCGa--UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 29554 0.68 0.671995
Target:  5'- cUUgAUGCCGCCGCcGCGGcGGCG-GCc -3'
miRNA:   3'- -AAgUACGGCGGCGaUGUCcUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 74246 0.68 0.671995
Target:  5'- -gCggGUCGCCGC-GCGGGucuccGCGCGCc -3'
miRNA:   3'- aaGuaCGGCGGCGaUGUCCu----CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 85405 0.68 0.671995
Target:  5'- ----gGCCGCCGg-GCGGGGaCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCgaUGUCCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 36974 0.68 0.671995
Target:  5'- cUUCAUGCCGUCGCUcaugaucuccGCGGucuccAGC-CGCg -3'
miRNA:   3'- -AAGUACGGCGGCGA----------UGUCc----UCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 27617 0.68 0.6658
Target:  5'- cUCccGCCGCuCGCgcuccgggaucuugGC-GGAGCGCGCc -3'
miRNA:   3'- aAGuaCGGCG-GCGa-------------UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 48183 0.68 0.661663
Target:  5'- ----aGgCGCUGCUGCGGGAGC-UGUa -3'
miRNA:   3'- aaguaCgGCGGCGAUGUCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 12268 0.68 0.661663
Target:  5'- gUCGcgGCCGggucgcaccCCGCgcGCAGGAGCucGCGCa -3'
miRNA:   3'- aAGUa-CGGC---------GGCGa-UGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 22651 0.68 0.660629
Target:  5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3'
miRNA:   3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5'
25886 5' -57.4 NC_005337.1 + 41592 0.68 0.651307
Target:  5'- ----cGCCGCCGCc-CAGGAaggugaGCACGUc -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCU------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69889 0.68 0.651307
Target:  5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.