miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 1798 0.77 0.220551
Target:  5'- cUCcUGCCGCCGC-ACGGGAacccucuuugucaGCGCGCu -3'
miRNA:   3'- aAGuACGGCGGCGaUGUCCU-------------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 2068 0.74 0.363586
Target:  5'- -cCGUGCCGCaGCaGCAGGcgcacggugucGGCGCGCg -3'
miRNA:   3'- aaGUACGGCGgCGaUGUCC-----------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 2803 0.67 0.742862
Target:  5'- -gCAUGUgcacuaggCGCUGCUGCAGGAcGuCACGg -3'
miRNA:   3'- aaGUACG--------GCGGCGAUGUCCU-C-GUGCg -5'
25886 5' -57.4 NC_005337.1 + 4573 0.67 0.712896
Target:  5'- aUC-UGCUGCCGCgggcGCGGcGAcuGCGCGUg -3'
miRNA:   3'- aAGuACGGCGGCGa---UGUC-CU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 5423 0.71 0.498428
Target:  5'- gUUcgGCCGUgGUcagGCagAGGAGCACGCg -3'
miRNA:   3'- aAGuaCGGCGgCGa--UG--UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 5965 0.72 0.423388
Target:  5'- cUCGcGCCGCgCGCgagcagACGGGccaGGCGCGCg -3'
miRNA:   3'- aAGUaCGGCG-GCGa-----UGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 6894 0.71 0.518123
Target:  5'- -cCAUGUCGCgCGCgcGCGGGuccgcgccGGCGCGCa -3'
miRNA:   3'- aaGUACGGCG-GCGa-UGUCC--------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 8867 0.66 0.817693
Target:  5'- ----cGCCGCCG-UGCAuGAcgGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCgAUGUcCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 9001 0.68 0.651307
Target:  5'- -cCGUGCCGggGCUGCAGcgcauGAGUACGUg -3'
miRNA:   3'- aaGUACGGCggCGAUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 9352 0.66 0.817693
Target:  5'- ---cUGCUGUCGggguccagggGCAGGGGCAUGCu -3'
miRNA:   3'- aaguACGGCGGCga--------UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 10414 0.71 0.528086
Target:  5'- --gGUGCgGCUGCgccCAGGAGgACGCc -3'
miRNA:   3'- aagUACGgCGGCGau-GUCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 10432 0.67 0.73296
Target:  5'- -cCAUGCaCGCCGCgaacgccgggAC-GGAGC-CGCc -3'
miRNA:   3'- aaGUACG-GCGGCGa---------UGuCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 10827 0.68 0.702753
Target:  5'- -cCGUGCUGgCGCUGCGgcgcGGAGgGCGa -3'
miRNA:   3'- aaGUACGGCgGCGAUGU----CCUCgUGCg -5'
25886 5' -57.4 NC_005337.1 + 11853 0.66 0.771931
Target:  5'- --uGUGCCGCaucgGCgcggACAGGcgccGCGCGCc -3'
miRNA:   3'- aagUACGGCGg---CGa---UGUCCu---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 12268 0.68 0.661663
Target:  5'- gUCGcgGCCGggucgcaccCCGCgcGCAGGAGCucGCGCa -3'
miRNA:   3'- aAGUa-CGGC---------GGCGa-UGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 13063 0.74 0.363586
Target:  5'- -cCGUGUCGCUGCUGCGcGcGGGCGCGg -3'
miRNA:   3'- aaGUACGGCGGCGAUGU-C-CUCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.