miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 13895 0.67 0.752664
Target:  5'- -aCGUGCCGCacgaGCcgGCAGGcGCGC-Cg -3'
miRNA:   3'- aaGUACGGCGg---CGa-UGUCCuCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 14406 0.66 0.790685
Target:  5'- ----cGCCGgCGCUGaaccgcgccgcCAGGAGaCACGUg -3'
miRNA:   3'- aaguaCGGCgGCGAU-----------GUCCUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 14429 0.75 0.295707
Target:  5'- -aCGUGCCGCCGCUGgcgcCGGGuaccgAGCGcCGCg -3'
miRNA:   3'- aaGUACGGCGGCGAU----GUCC-----UCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 14923 0.73 0.405702
Target:  5'- --gAUGCUGCCGCUG-GGGAGCcaggccuuGCGCa -3'
miRNA:   3'- aagUACGGCGGCGAUgUCCUCG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 15500 0.66 0.780439
Target:  5'- ----cGCCGCCGCcgGCgucaucuAGGAcgucgcgcaGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCGa-UG-------UCCU---------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 19883 0.66 0.817693
Target:  5'- --gAUGCa-CCGgcACAGGAGCGCGUa -3'
miRNA:   3'- aagUACGgcGGCgaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 20095 0.67 0.762357
Target:  5'- --gAUGCCGuCCGCcauCAGcgaGAGCGCGUc -3'
miRNA:   3'- aagUACGGC-GGCGau-GUC---CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22296 0.66 0.808852
Target:  5'- -aCGUGUa-CCGggACAGGAacGCGCGCa -3'
miRNA:   3'- aaGUACGgcGGCgaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22651 0.68 0.660629
Target:  5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3'
miRNA:   3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5'
25886 5' -57.4 NC_005337.1 + 23725 0.66 0.781377
Target:  5'- aUCcUGaCCGCCGCcGC-GGAGCG-GCa -3'
miRNA:   3'- aAGuAC-GGCGGCGaUGuCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 23909 0.71 0.484843
Target:  5'- gUCGcUGCCGCgCGCccgcgcgcccgcgGCAGGcGCGCGCg -3'
miRNA:   3'- aAGU-ACGGCG-GCGa------------UGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 25714 0.69 0.620179
Target:  5'- gUCcgGCCgcGCCGCcagcguCAGGcGCGCGCc -3'
miRNA:   3'- aAGuaCGG--CGGCGau----GUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 27617 0.68 0.6658
Target:  5'- cUCccGCCGCuCGCgcuccgggaucuugGC-GGAGCGCGCc -3'
miRNA:   3'- aAGuaCGGCG-GCGa-------------UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 28945 0.68 0.682293
Target:  5'- cUCccGCCGCCGCacgugcuggGCAacuGGGGCguGCGCa -3'
miRNA:   3'- aAGuaCGGCGGCGa--------UGU---CCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 29554 0.68 0.671995
Target:  5'- cUUgAUGCCGCCGCcGCGGcGGCG-GCc -3'
miRNA:   3'- -AAgUACGGCGGCGaUGUCcUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 29790 0.66 0.817693
Target:  5'- ---cUGUCGCCGCUGCGcGuGCucCGCg -3'
miRNA:   3'- aaguACGGCGGCGAUGUcCuCGu-GCG- -5'
25886 5' -57.4 NC_005337.1 + 30356 0.79 0.185425
Target:  5'- ----aGCC-CCGCggACAGGAGCACGCg -3'
miRNA:   3'- aaguaCGGcGGCGa-UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 30387 0.67 0.722968
Target:  5'- -cCAUGUCGCgCGCggcCAGcAGCugGCg -3'
miRNA:   3'- aaGUACGGCG-GCGau-GUCcUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 31225 0.67 0.73296
Target:  5'- --gAUGCCG-CGCUGCAGcAGCAUcaGCa -3'
miRNA:   3'- aagUACGGCgGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 31764 0.67 0.73296
Target:  5'- -cCGUGgCGUCggaGCUGCucgggAGGAGCACGUc -3'
miRNA:   3'- aaGUACgGCGG---CGAUG-----UCCUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.