miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 44216 0.67 0.762357
Target:  5'- ----gGCCGCCGCggaGCGGGcgAGCGC-Cg -3'
miRNA:   3'- aaguaCGGCGGCGa--UGUCC--UCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 44645 0.7 0.589132
Target:  5'- aUCGUG-CGCCGCaGCGGGcGCuACGUg -3'
miRNA:   3'- aAGUACgGCGGCGaUGUCCuCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 48004 0.68 0.682293
Target:  5'- -gCGUGgccuggauCCGCgCGCUGC-GGAGCACGa -3'
miRNA:   3'- aaGUAC--------GGCG-GCGAUGuCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 48183 0.68 0.661663
Target:  5'- ----aGgCGCUGCUGCGGGAGC-UGUa -3'
miRNA:   3'- aaguaCgGCGGCGAUGUCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 48299 0.66 0.781377
Target:  5'- gUCGcGCCuCCGCaUGCGGugcgcGGGCGCGCu -3'
miRNA:   3'- aAGUaCGGcGGCG-AUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 50314 0.67 0.752664
Target:  5'- ----cGCCGCCGCUGCccu-GCGCGg -3'
miRNA:   3'- aaguaCGGCGGCGAUGuccuCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 52097 0.72 0.423388
Target:  5'- -cCcgGCgGCCGCgUGCAGGuGCGCGa -3'
miRNA:   3'- aaGuaCGgCGGCG-AUGUCCuCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 53019 0.66 0.817693
Target:  5'- -gCAUGaacCUGCgGCUguGCGGGAGCugccgGCGCa -3'
miRNA:   3'- aaGUAC---GGCGgCGA--UGUCCUCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 54081 0.71 0.508235
Target:  5'- cUUCA-GCgC-CCGCgGCAGGAGCGCGUc -3'
miRNA:   3'- -AAGUaCG-GcGGCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 54103 0.72 0.460098
Target:  5'- -gCGUGUacgggCGCUGCUACGuGGAGCGCGa -3'
miRNA:   3'- aaGUACG-----GCGGCGAUGU-CCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 54874 0.72 0.432401
Target:  5'- --gAUGCCgcGCCGCcGCGGGAGCA-GCu -3'
miRNA:   3'- aagUACGG--CGGCGaUGUCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 56055 0.66 0.803468
Target:  5'- -aCAUGCUGCgGCUguacacGCacgaccucaugaccgAGGAGCGCGa -3'
miRNA:   3'- aaGUACGGCGgCGA------UG---------------UCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 56297 0.81 0.136
Target:  5'- gUCAUGCgGCCGCUgcucgagaucucGCAGGAGCGCu- -3'
miRNA:   3'- aAGUACGgCGGCGA------------UGUCCUCGUGcg -5'
25886 5' -57.4 NC_005337.1 + 56723 0.72 0.423388
Target:  5'- cUCAaGCUGCUGCUGCAGuAGCGCucGCa -3'
miRNA:   3'- aAGUaCGGCGGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 57262 0.67 0.73296
Target:  5'- gUUCggGCacgggGCCGC-GCGGGgccGGCGCGCg -3'
miRNA:   3'- -AAGuaCGg----CGGCGaUGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 57643 0.7 0.568583
Target:  5'- gUUCAUGCUGgUGCUGCcGG-GCGcCGCg -3'
miRNA:   3'- -AAGUACGGCgGCGAUGuCCuCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 58309 0.66 0.816816
Target:  5'- -aCGUGCCGgacaaguCCGUgcucucgaaGCAGGAGUACGa -3'
miRNA:   3'- aaGUACGGC-------GGCGa--------UGUCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 58598 0.66 0.787908
Target:  5'- --gAUGCUGCUGCUGuacuucgcggccuuCGGGAucucGCACGUg -3'
miRNA:   3'- aagUACGGCGGCGAU--------------GUCCU----CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 58708 0.68 0.692549
Target:  5'- gUCAUcGCCGUCG--GCAGGuagaugGGCGCGCc -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCC------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 59025 0.66 0.808852
Target:  5'- gUCGUGgCGcCCGCUGguGGA-CGCGa -3'
miRNA:   3'- aAGUACgGC-GGCGAUguCCUcGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.