miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 59731 0.68 0.671995
Target:  5'- aUCAcG-CGCCGCgcgGC-GGAGCGCGUc -3'
miRNA:   3'- aAGUaCgGCGGCGa--UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 60939 0.67 0.761393
Target:  5'- ----cGCCacuGCCGCgccgGCAugcgcauGGGGCGCGCg -3'
miRNA:   3'- aaguaCGG---CGGCGa---UGU-------CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 62954 0.67 0.742862
Target:  5'- ----cGCCGCCGC-GCGGGucGC-CGCc -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCu-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 64003 0.7 0.558374
Target:  5'- cUUGUGCCGCgGCUuCcGGcacAGCGCGCa -3'
miRNA:   3'- aAGUACGGCGgCGAuGuCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64328 0.69 0.60981
Target:  5'- gUUCAUG-CGCCGCUuCGGGAucCGCGUg -3'
miRNA:   3'- -AAGUACgGCGGCGAuGUCCUc-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64365 0.71 0.479075
Target:  5'- -cCGUGuCCaGCgCGC-GCAGGAGCACGUu -3'
miRNA:   3'- aaGUAC-GG-CG-GCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64922 0.66 0.771931
Target:  5'- ----gGCCGgcCCGC-GCGGGAaaGCGCGCg -3'
miRNA:   3'- aaguaCGGC--GGCGaUGUCCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65105 0.69 0.630556
Target:  5'- -aCGUGCUugGCgaugUGCUGCAGcAGCACGCg -3'
miRNA:   3'- aaGUACGG--CG----GCGAUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65335 0.71 0.498428
Target:  5'- --gGUGCCGCCGCgcgggUACGGGucgauGC-CGCa -3'
miRNA:   3'- aagUACGGCGGCG-----AUGUCCu----CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 65526 0.68 0.702753
Target:  5'- --gGUGCgGCCGgUGCuGGAG-GCGCa -3'
miRNA:   3'- aagUACGgCGGCgAUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65702 0.7 0.578838
Target:  5'- gUUgGUGCacaGCCGCacgcGguGGGGCGCGCc -3'
miRNA:   3'- -AAgUACGg--CGGCGa---UguCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 65807 0.66 0.771931
Target:  5'- gUCAUGCUGCaGaaGCAGGAGaucccgGCGCu -3'
miRNA:   3'- aAGUACGGCGgCgaUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 65961 0.71 0.498428
Target:  5'- -gCGUGCCGCC-CUcCucGGGCACGCg -3'
miRNA:   3'- aaGUACGGCGGcGAuGucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 66131 0.75 0.302737
Target:  5'- ----cGCCGcCCGCUAgGGGcGCGCGCg -3'
miRNA:   3'- aaguaCGGC-GGCGAUgUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 66505 0.67 0.716934
Target:  5'- cUCGcUGgaGCCGCUGCAgccggccgagacgcuGGAGCuGCGCg -3'
miRNA:   3'- aAGU-ACggCGGCGAUGU---------------CCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 67925 0.66 0.817693
Target:  5'- --aGUGCCGCgguggucgCGCUcCAcGAGCACGUg -3'
miRNA:   3'- aagUACGGCG--------GCGAuGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 68480 0.67 0.762357
Target:  5'- ----cGCCGCCGCacCGGGcGcCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCuC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 68540 0.67 0.712896
Target:  5'- -gCGUGCCG-CGCUAguGacggcgccGGGCGCGCc -3'
miRNA:   3'- aaGUACGGCgGCGAUguC--------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69014 0.7 0.59326
Target:  5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3'
miRNA:   3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69284 0.66 0.799847
Target:  5'- ----cGCCGCgCGCgACGGGcAGUucGCGCg -3'
miRNA:   3'- aaguaCGGCG-GCGaUGUCC-UCG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.