miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 133369 0.66 0.814177
Target:  5'- ----cGCCGCCGCgcucgucgcgcuCGGGcuccugcucGGCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGau----------GUCC---------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133369 0.66 0.814177
Target:  5'- ----cGCCGCCGCgcucgucgcgcuCGGGcuccugcucGGCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGau----------GUCC---------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 133091 0.67 0.761393
Target:  5'- -cCGUGCCG-CGCUcgcgcaccgccuaGCGGGccgcuccgccGGCGCGCu -3'
miRNA:   3'- aaGUACGGCgGCGA-------------UGUCC----------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132629 0.69 0.599459
Target:  5'- -cCAaGCuCGUCGCcGCGGGcGCGCGCa -3'
miRNA:   3'- aaGUaCG-GCGGCGaUGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132578 0.68 0.702753
Target:  5'- -cCGUGUCGCUGUUGCGac-GCGCGCu -3'
miRNA:   3'- aaGUACGGCGGCGAUGUccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132313 0.68 0.692549
Target:  5'- gUCcgGCUGCuCGCUgacGCGGGcAGCgacauGCGCa -3'
miRNA:   3'- aAGuaCGGCG-GCGA---UGUCC-UCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 131875 0.66 0.799847
Target:  5'- gUCGU-CCGCUGCcuccUGgAGGcgGGCGCGCa -3'
miRNA:   3'- aAGUAcGGCGGCG----AUgUCC--UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 131228 0.67 0.712896
Target:  5'- ----aGCCGCUGCUGCGcugguucGAGuCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGAUGUc------CUC-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 131189 0.66 0.808852
Target:  5'- gUCGcugGCCGUCGCcgaggUGCGcGGAGUccGCGCu -3'
miRNA:   3'- aAGUa--CGGCGGCG-----AUGU-CCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 131165 0.68 0.682293
Target:  5'- -aCAcGCUGCUGCUGCugauGCGCGCg -3'
miRNA:   3'- aaGUaCGGCGGCGAUGuccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 131011 0.68 0.692549
Target:  5'- -aCGUgGCCGCCGCgcaccgcaacgACaAGGcguGCGCGCg -3'
miRNA:   3'- aaGUA-CGGCGGCGa----------UG-UCCu--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 130169 0.71 0.518123
Target:  5'- uUUCGgagGCCGUgCGC-GC-GGAGCACGCg -3'
miRNA:   3'- -AAGUa--CGGCG-GCGaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 129770 0.68 0.682293
Target:  5'- -aCGUGUucgggaacaCGCCGCUGCAcGuGCugGCg -3'
miRNA:   3'- aaGUACG---------GCGGCGAUGUcCuCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 128724 0.7 0.578838
Target:  5'- -gCGUGUaccgcgaGCCGCU-CuGGAGCGCGUg -3'
miRNA:   3'- aaGUACGg------CGGCGAuGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 128156 0.66 0.808852
Target:  5'- cUCGgacGCaCGCCGCUGCAcGuGGC-CGCg -3'
miRNA:   3'- aAGUa--CG-GCGGCGAUGU-CcUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 127566 0.73 0.414487
Target:  5'- gUCcgGCUGCUGCUGgAGGcGgGCGCa -3'
miRNA:   3'- aAGuaCGGCGGCGAUgUCCuCgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.