Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25886 | 5' | -57.4 | NC_005337.1 | + | 111209 | 0.66 | 0.808852 |
Target: 5'- -gCAcgGCCGCCGCguucc-GGCGCGCg -3' miRNA: 3'- aaGUa-CGGCGGCGauguccUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 111025 | 0.67 | 0.712896 |
Target: 5'- -aCGUGCCGCCGUcacgaccuccccUGgAGGAugACGCg -3' miRNA: 3'- aaGUACGGCGGCG------------AUgUCCUcgUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 110356 | 0.67 | 0.742862 |
Target: 5'- ----cGCCuGCCGCgggcGCGcGGGCGCGCg -3' miRNA: 3'- aaguaCGG-CGGCGa---UGUcCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 109869 | 0.71 | 0.518123 |
Target: 5'- ----gGCCGCCGCcaUGCAccGGAGCAUGg -3' miRNA: 3'- aaguaCGGCGGCG--AUGU--CCUCGUGCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 108755 | 0.7 | 0.558374 |
Target: 5'- -gCGUGg-GCCGCUGCcuGGAGCGCGUc -3' miRNA: 3'- aaGUACggCGGCGAUGu-CCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 108511 | 0.66 | 0.803468 |
Target: 5'- aUCAUGUaccuggagCGCaCGCUggacggcgcgacgguGCGGG-GCGCGCg -3' miRNA: 3'- aAGUACG--------GCG-GCGA---------------UGUCCuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 107863 | 0.67 | 0.722968 |
Target: 5'- aUCGcgGCCGCCGC-----GAGCACGUa -3' miRNA: 3'- aAGUa-CGGCGGCGaugucCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 107245 | 0.71 | 0.528086 |
Target: 5'- cUCGcgGCUGUCGCUGCuggccgGGGAGCACa- -3' miRNA: 3'- aAGUa-CGGCGGCGAUG------UCCUCGUGcg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 106711 | 0.66 | 0.808852 |
Target: 5'- -aCAaGCUGUCGCUGCcGGAG-ACGUu -3' miRNA: 3'- aaGUaCGGCGGCGAUGuCCUCgUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 106548 | 0.67 | 0.712896 |
Target: 5'- gUCGUGCgcaagaGCgCGCUGCGGGAGaucgUGCa -3' miRNA: 3'- aAGUACGg-----CG-GCGAUGUCCUCgu--GCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 105476 | 0.67 | 0.753638 |
Target: 5'- gUCGUGCUGCgGCgcaugagcaagaucCGGGAGUucgugGCGCa -3' miRNA: 3'- aAGUACGGCGgCGau------------GUCCUCG-----UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 105292 | 0.68 | 0.682293 |
Target: 5'- ----gGCCGCCGCUgcccGCAGucGCuGCGCa -3' miRNA: 3'- aaguaCGGCGGCGA----UGUCcuCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 105100 | 0.68 | 0.692549 |
Target: 5'- ----cGCCGCCGCgucuCcGGAGCugGa -3' miRNA: 3'- aaguaCGGCGGCGau--GuCCUCGugCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 104613 | 0.7 | 0.578838 |
Target: 5'- ----cGgCGCCaCcGCGGGAGCACGCg -3' miRNA: 3'- aaguaCgGCGGcGaUGUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 103527 | 0.76 | 0.282029 |
Target: 5'- -gCAcGCUGCCGCccgAGGAGCGCGCg -3' miRNA: 3'- aaGUaCGGCGGCGaugUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 102170 | 0.68 | 0.702753 |
Target: 5'- -aCAUGCgCGCCGCcauguacaacgUGCuGGAG-ACGCu -3' miRNA: 3'- aaGUACG-GCGGCG-----------AUGuCCUCgUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 100874 | 0.67 | 0.742862 |
Target: 5'- -aCGgcgGCCGCCagaGCUACuucgcGGGGCgGCGCu -3' miRNA: 3'- aaGUa--CGGCGG---CGAUGu----CCUCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 99649 | 0.67 | 0.721964 |
Target: 5'- -aCGUGCgcggcauCGCCGCgcgGCuGG-GCGCGCc -3' miRNA: 3'- aaGUACG-------GCGGCGa--UGuCCuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 99432 | 0.68 | 0.686401 |
Target: 5'- ----cGCCGCCGCauauaugccccaucaUGCGGGAGauagagGCGCu -3' miRNA: 3'- aaguaCGGCGGCG---------------AUGUCCUCg-----UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 98468 | 0.7 | 0.538119 |
Target: 5'- -gCAUGCgUG-CGCaagGCAGGGGCGCGCc -3' miRNA: 3'- aaGUACG-GCgGCGa--UGUCCUCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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