miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 98146 0.66 0.790685
Target:  5'- ----cGCaCGCCGCgcacgACAGGGuGCcuGCGCa -3'
miRNA:   3'- aaguaCG-GCGGCGa----UGUCCU-CG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 96560 0.7 0.568583
Target:  5'- --gAUGCCGCUGCaGguGGAcgaccucacGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGaUguCCU---------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 96117 0.75 0.317182
Target:  5'- -aCAUGCgGCCGC-GCAGGAuGC-CGCg -3'
miRNA:   3'- aaGUACGgCGGCGaUGUCCU-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 96031 0.66 0.817693
Target:  5'- ----cGCgCGCCGCgucucgucagGCAgccGGAGCACGUc -3'
miRNA:   3'- aaguaCG-GCGGCGa---------UGU---CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 95903 0.7 0.548217
Target:  5'- cUCGUGCuCGCgGCgacgGCGGccGCGCGCg -3'
miRNA:   3'- aAGUACG-GCGgCGa---UGUCcuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 93401 0.67 0.742862
Target:  5'- -cCAggacgGCCGCCcuCUGCaccGGGGGCACGg -3'
miRNA:   3'- aaGUa----CGGCGGc-GAUG---UCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 92525 0.66 0.816816
Target:  5'- aUCAUaGCCGCCGa-GCAGcAGCgccaacaGCGCa -3'
miRNA:   3'- aAGUA-CGGCGGCgaUGUCcUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 91779 0.67 0.742862
Target:  5'- -aCGU-CCGCaGCUuCAGGAGCucGCGCg -3'
miRNA:   3'- aaGUAcGGCGgCGAuGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 91192 0.67 0.73296
Target:  5'- -cCcgGgCGCCGCgaUGCGGacGGGCGCGCc -3'
miRNA:   3'- aaGuaCgGCGGCG--AUGUC--CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 88257 0.71 0.518123
Target:  5'- -gCGUGCCGgCGCgccgGCGGGcGC-CGCg -3'
miRNA:   3'- aaGUACGGCgGCGa---UGUCCuCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 88149 0.69 0.645085
Target:  5'- cUgGUGCCGCCcgaccaggacgaccaGCUGCGGGGaCACGg -3'
miRNA:   3'- aAgUACGGCGG---------------CGAUGUCCUcGUGCg -5'
25886 5' -57.4 NC_005337.1 + 87801 0.7 0.548217
Target:  5'- ----cGCgGCUGCUGCccGGGAGCuCGCg -3'
miRNA:   3'- aaguaCGgCGGCGAUG--UCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 87449 0.7 0.558374
Target:  5'- gUCuUGCCGUCGCUGgAGauggccAGCGCGCc -3'
miRNA:   3'- aAGuACGGCGGCGAUgUCc-----UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 85405 0.68 0.671995
Target:  5'- ----gGCCGCCGg-GCGGGGaCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCgaUGUCCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 83897 0.67 0.762357
Target:  5'- ---uUGuCCGCCgGgUACGGGGGCgGCGCc -3'
miRNA:   3'- aaguAC-GGCGG-CgAUGUCCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 83205 0.69 0.630556
Target:  5'- gUCAUGCgGUCGacggGCAuGAGCACGUu -3'
miRNA:   3'- aAGUACGgCGGCga--UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 82120 0.66 0.799847
Target:  5'- ----aGCCG-CGCUggcGCAuGAGCGCGCg -3'
miRNA:   3'- aaguaCGGCgGCGA---UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 81812 0.66 0.781377
Target:  5'- cUUCAgcugGCC-CUGCgcCGGGAGCuCGCu -3'
miRNA:   3'- -AAGUa---CGGcGGCGauGUCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 81272 1.1 0.00135
Target:  5'- gUUCAUGCCGCCGCUACAGGAGCACGCg -3'
miRNA:   3'- -AAGUACGGCGGCGAUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78218 0.66 0.808852
Target:  5'- gUCGUGCguguacaGCCGCagcauguCGGuGGGCAUGCg -3'
miRNA:   3'- aAGUACGg------CGGCGau-----GUC-CUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.