miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 78128 0.66 0.781377
Target:  5'- gUCGgccuUGCCGCCccGCUGCAcgccGcGCACGCu -3'
miRNA:   3'- aAGU----ACGGCGG--CGAUGUc---CuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 78069 0.66 0.780439
Target:  5'- aUCAUGCCG-CGCUccuuGCGGuaGAGCuuguuccGCGCg -3'
miRNA:   3'- aAGUACGGCgGCGA----UGUC--CUCG-------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 78068 0.66 0.781377
Target:  5'- -----uCCGCCacgucCUGCAGGuAGCGCGCg -3'
miRNA:   3'- aaguacGGCGGc----GAUGUCC-UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 77137 0.7 0.558374
Target:  5'- -gCGUGCCGCCGCc----GAGCAgCGCg -3'
miRNA:   3'- aaGUACGGCGGCGaugucCUCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 76833 0.7 0.558374
Target:  5'- -gCAUGCuCGCgGUgGCcGGAGCGCGUa -3'
miRNA:   3'- aaGUACG-GCGgCGaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 76056 0.72 0.469537
Target:  5'- -cCAUGaCCGCCGC-GCGGcGGUACGCc -3'
miRNA:   3'- aaGUAC-GGCGGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75830 0.71 0.528086
Target:  5'- cUCGUGCacugCGUCGCggcauaaACAGGAGCgGCGCc -3'
miRNA:   3'- aAGUACG----GCGGCGa------UGUCCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 75397 0.69 0.60981
Target:  5'- gUCuugGCCGCgcggaUGCUGCGGacggcgcgcGAGCGCGCg -3'
miRNA:   3'- aAGua-CGGCG-----GCGAUGUC---------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75013 0.71 0.479075
Target:  5'- ----gGCCGCCGCUgacgcGCAccguGGGGCugGCc -3'
miRNA:   3'- aaguaCGGCGGCGA-----UGU----CCUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 74246 0.68 0.671995
Target:  5'- -gCggGUCGCCGC-GCGGGucuccGCGCGCc -3'
miRNA:   3'- aaGuaCGGCGGCGaUGUCCu----CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 74161 0.75 0.324597
Target:  5'- gUCA--CCGCCguGCUGCGGGAgGCGCGCu -3'
miRNA:   3'- aAGUacGGCGG--CGAUGUCCU-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 73338 0.73 0.405702
Target:  5'- -gCAUGCCGgCGCgGCAGuGGCGCGUc -3'
miRNA:   3'- aaGUACGGCgGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 72792 0.66 0.790685
Target:  5'- aUCAacGCgCGCCG--GCAGGAGUACGa -3'
miRNA:   3'- aAGUa-CG-GCGGCgaUGUCCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 70273 0.67 0.752664
Target:  5'- --uGUGCCggaaGCCGCgGCAcaAGCACGCg -3'
miRNA:   3'- aagUACGG----CGGCGaUGUccUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69889 0.68 0.651307
Target:  5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69483 0.7 0.538119
Target:  5'- gUCGUGCCGCCGC-GC-GGAGgACc- -3'
miRNA:   3'- aAGUACGGCGGCGaUGuCCUCgUGcg -5'
25886 5' -57.4 NC_005337.1 + 69284 0.66 0.799847
Target:  5'- ----cGCCGCgCGCgACGGGcAGUucGCGCg -3'
miRNA:   3'- aaguaCGGCG-GCGaUGUCC-UCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 69014 0.7 0.59326
Target:  5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3'
miRNA:   3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 68540 0.67 0.712896
Target:  5'- -gCGUGCCG-CGCUAguGacggcgccGGGCGCGCc -3'
miRNA:   3'- aaGUACGGCgGCGAUguC--------CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 68480 0.67 0.762357
Target:  5'- ----cGCCGCCGCacCGGGcGcCGCGCu -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCuC-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.