miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 130169 0.71 0.518123
Target:  5'- uUUCGgagGCCGUgCGC-GC-GGAGCACGCg -3'
miRNA:   3'- -AAGUa--CGGCG-GCGaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 52097 0.72 0.423388
Target:  5'- -cCcgGCgGCCGCgUGCAGGuGCGCGa -3'
miRNA:   3'- aaGuaCGgCGGCG-AUGUCCuCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 123295 0.72 0.432401
Target:  5'- -cCGUGCCGCacgCGCUGCGcGGAuCGCGCc -3'
miRNA:   3'- aaGUACGGCG---GCGAUGU-CCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 76056 0.72 0.469537
Target:  5'- -cCAUGaCCGCCGC-GCGGcGGUACGCc -3'
miRNA:   3'- aaGUAC-GGCGGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75013 0.71 0.479075
Target:  5'- ----gGCCGCCGCUgacgcGCAccguGGGGCugGCc -3'
miRNA:   3'- aaguaCGGCGGCGA-----UGU----CCUCGugCG- -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 54081 0.71 0.508235
Target:  5'- cUUCA-GCgC-CCGCgGCAGGAGCGCGUc -3'
miRNA:   3'- -AAGUaCG-GcGGCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 6894 0.71 0.518123
Target:  5'- -cCAUGUCGCgCGCgcGCGGGuccgcgccGGCGCGCa -3'
miRNA:   3'- aaGUACGGCG-GCGa-UGUCC--------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 123583 0.71 0.518123
Target:  5'- --aGUGCCGCUGCUGCGagcugcGGccGCACGUg -3'
miRNA:   3'- aagUACGGCGGCGAUGU------CCu-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 127566 0.73 0.414487
Target:  5'- gUCcgGCUGCUGCUGgAGGcGgGCGCa -3'
miRNA:   3'- aAGuaCGGCGGCGAUgUCCuCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 14923 0.73 0.405702
Target:  5'- --gAUGCUGCCGCUG-GGGAGCcaggccuuGCGCa -3'
miRNA:   3'- aagUACGGCGGCGAUgUCCUCG--------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 30356 0.79 0.185425
Target:  5'- ----aGCC-CCGCggACAGGAGCACGCg -3'
miRNA:   3'- aaguaCGGcGGCGa-UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 42486 0.77 0.238103
Target:  5'- ----cGCCGCCGCcgu-GGAGCGCGCg -3'
miRNA:   3'- aaguaCGGCGGCGauguCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 103527 0.76 0.282029
Target:  5'- -gCAcGCUGCCGCccgAGGAGCGCGCg -3'
miRNA:   3'- aaGUaCGGCGGCGaugUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 96117 0.75 0.317182
Target:  5'- -aCAUGCgGCCGC-GCAGGAuGC-CGCg -3'
miRNA:   3'- aaGUACGgCGGCGaUGUCCU-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 74161 0.75 0.324597
Target:  5'- gUCA--CCGCCguGCUGCGGGAgGCGCGCu -3'
miRNA:   3'- aAGUacGGCGG--CGAUGUCCU-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 36602 0.74 0.347608
Target:  5'- -aCGUGCaCGcCCGCgGCcuGGAGCGCGCg -3'
miRNA:   3'- aaGUACG-GC-GGCGaUGu-CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 2068 0.74 0.363586
Target:  5'- -cCGUGCCGCaGCaGCAGGcgcacggugucGGCGCGCg -3'
miRNA:   3'- aaGUACGGCGgCGaUGUCC-----------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 13063 0.74 0.363586
Target:  5'- -cCGUGUCGCUGCUGCGcGcGGGCGCGg -3'
miRNA:   3'- aaGUACGGCGGCGAUGU-C-CUCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.