miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 123583 0.71 0.518123
Target:  5'- --aGUGCCGCUGCUGCGagcugcGGccGCACGUg -3'
miRNA:   3'- aagUACGGCGGCGAUGU------CCu-CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 130169 0.71 0.518123
Target:  5'- uUUCGgagGCCGUgCGC-GC-GGAGCACGCg -3'
miRNA:   3'- -AAGUa--CGGCG-GCGaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 25714 0.69 0.620179
Target:  5'- gUCcgGCCgcGCCGCcagcguCAGGcGCGCGCc -3'
miRNA:   3'- aAGuaCGG--CGGCGau----GUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 33176 0.69 0.624329
Target:  5'- uUUUAUGCC-CCGCgccggACGGGcccucccgacggcggGGCGCGCc -3'
miRNA:   3'- -AAGUACGGcGGCGa----UGUCC---------------UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 83205 0.69 0.630556
Target:  5'- gUCAUGCgGUCGacggGCAuGAGCACGUu -3'
miRNA:   3'- aAGUACGgCGGCga--UGUcCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 88149 0.69 0.645085
Target:  5'- cUgGUGCCGCCcgaccaggacgaccaGCUGCGGGGaCACGg -3'
miRNA:   3'- aAgUACGGCGG---------------CGAUGUCCUcGUGCg -5'
25886 5' -57.4 NC_005337.1 + 69889 0.68 0.651307
Target:  5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 41592 0.68 0.651307
Target:  5'- ----cGCCGCCGCc-CAGGAaggugaGCACGUc -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCU------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 22651 0.68 0.660629
Target:  5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3'
miRNA:   3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5'
25886 5' -57.4 NC_005337.1 + 27617 0.68 0.6658
Target:  5'- cUCccGCCGCuCGCgcuccgggaucuugGC-GGAGCGCGCc -3'
miRNA:   3'- aAGuaCGGCG-GCGa-------------UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64328 0.69 0.60981
Target:  5'- gUUCAUG-CGCCGCUuCGGGAucCGCGUg -3'
miRNA:   3'- -AAGUACgGCGGCGAuGUCCUc-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69014 0.7 0.59326
Target:  5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3'
miRNA:   3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 10414 0.71 0.528086
Target:  5'- --gGUGCgGCUGCgccCAGGAGgACGCc -3'
miRNA:   3'- aagUACGgCGGCGau-GUCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 98468 0.7 0.538119
Target:  5'- -gCAUGCgUG-CGCaagGCAGGGGCGCGCc -3'
miRNA:   3'- aaGUACG-GCgGCGa--UGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 69483 0.7 0.538119
Target:  5'- gUCGUGCCGCCGC-GC-GGAGgACc- -3'
miRNA:   3'- aAGUACGGCGGCGaUGuCCUCgUGcg -5'
25886 5' -57.4 NC_005337.1 + 38468 0.7 0.548217
Target:  5'- cUUCAUGCgGUgCGCgcCGGGcGCGCGCg -3'
miRNA:   3'- -AAGUACGgCG-GCGauGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 76833 0.7 0.558374
Target:  5'- -gCAUGCuCGCgGUgGCcGGAGCGCGUa -3'
miRNA:   3'- aaGUACG-GCGgCGaUGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 87449 0.7 0.558374
Target:  5'- gUCuUGCCGUCGCUGgAGauggccAGCGCGCc -3'
miRNA:   3'- aAGuACGGCGGCGAUgUCc-----UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 57643 0.7 0.568583
Target:  5'- gUUCAUGCUGgUGCUGCcGG-GCGcCGCg -3'
miRNA:   3'- -AAGUACGGCgGCGAUGuCCuCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 128724 0.7 0.578838
Target:  5'- -gCGUGUaccgcgaGCCGCU-CuGGAGCGCGUg -3'
miRNA:   3'- aaGUACGg------CGGCGAuGuCCUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.