Results 81 - 100 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25886 | 5' | -57.4 | NC_005337.1 | + | 105292 | 0.68 | 0.682293 |
Target: 5'- ----gGCCGCCGCUgcccGCAGucGCuGCGCa -3' miRNA: 3'- aaguaCGGCGGCGA----UGUCcuCG-UGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 129770 | 0.68 | 0.682293 |
Target: 5'- -aCGUGUucgggaacaCGCCGCUGCAcGuGCugGCg -3' miRNA: 3'- aaGUACG---------GCGGCGAUGUcCuCGugCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 131165 | 0.68 | 0.682293 |
Target: 5'- -aCAcGCUGCUGCUGCugauGCGCGCg -3' miRNA: 3'- aaGUaCGGCGGCGAUGuccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 48004 | 0.68 | 0.682293 |
Target: 5'- -gCGUGgccuggauCCGCgCGCUGC-GGAGCACGa -3' miRNA: 3'- aaGUAC--------GGCG-GCGAUGuCCUCGUGCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 58708 | 0.68 | 0.692549 |
Target: 5'- gUCAUcGCCGUCG--GCAGGuagaugGGCGCGCc -3' miRNA: 3'- aAGUA-CGGCGGCgaUGUCC------UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 38292 | 0.68 | 0.702753 |
Target: 5'- gUCAaGCa-CCGgUGgAGGGGCGCGCg -3' miRNA: 3'- aAGUaCGgcGGCgAUgUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 132578 | 0.68 | 0.702753 |
Target: 5'- -cCGUGUCGCUGUUGCGac-GCGCGCu -3' miRNA: 3'- aaGUACGGCGGCGAUGUccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 27617 | 0.68 | 0.6658 |
Target: 5'- cUCccGCCGCuCGCgcuccgggaucuugGC-GGAGCGCGCc -3' miRNA: 3'- aAGuaCGGCG-GCGa-------------UGuCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 22651 | 0.68 | 0.660629 |
Target: 5'- cUUcgGCgcggacgCGCgGCUGCGGGAGCGCuucGCg -3' miRNA: 3'- aAGuaCG-------GCGgCGAUGUCCUCGUG---CG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 87449 | 0.7 | 0.558374 |
Target: 5'- gUCuUGCCGUCGCUGgAGauggccAGCGCGCc -3' miRNA: 3'- aAGuACGGCGGCGAUgUCc-----UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 57643 | 0.7 | 0.568583 |
Target: 5'- gUUCAUGCUGgUGCUGCcGG-GCGcCGCg -3' miRNA: 3'- -AAGUACGGCgGCGAUGuCCuCGU-GCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 128724 | 0.7 | 0.578838 |
Target: 5'- -gCGUGUaccgcgaGCCGCU-CuGGAGCGCGUg -3' miRNA: 3'- aaGUACGg------CGGCGAuGuCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 69014 | 0.7 | 0.59326 |
Target: 5'- ----cGCCGCCGCcgugucccggaugacUggcguGCAGGGGUACGCc -3' miRNA: 3'- aaguaCGGCGGCG---------------A-----UGUCCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 64328 | 0.69 | 0.60981 |
Target: 5'- gUUCAUG-CGCCGCUuCGGGAucCGCGUg -3' miRNA: 3'- -AAGUACgGCGGCGAuGUCCUc-GUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 25714 | 0.69 | 0.620179 |
Target: 5'- gUCcgGCCgcGCCGCcagcguCAGGcGCGCGCc -3' miRNA: 3'- aAGuaCGG--CGGCGau----GUCCuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 33176 | 0.69 | 0.624329 |
Target: 5'- uUUUAUGCC-CCGCgccggACGGGcccucccgacggcggGGCGCGCc -3' miRNA: 3'- -AAGUACGGcGGCGa----UGUCC---------------UCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 83205 | 0.69 | 0.630556 |
Target: 5'- gUCAUGCgGUCGacggGCAuGAGCACGUu -3' miRNA: 3'- aAGUACGgCGGCga--UGUcCUCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 88149 | 0.69 | 0.645085 |
Target: 5'- cUgGUGCCGCCcgaccaggacgaccaGCUGCGGGGaCACGg -3' miRNA: 3'- aAgUACGGCGG---------------CGAUGUCCUcGUGCg -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 69889 | 0.68 | 0.651307 |
Target: 5'- --uGUGCCGCCGCUccgacaacguGCuccuGCGCGCg -3' miRNA: 3'- aagUACGGCGGCGA----------UGuccuCGUGCG- -5' |
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25886 | 5' | -57.4 | NC_005337.1 | + | 41592 | 0.68 | 0.651307 |
Target: 5'- ----cGCCGCCGCc-CAGGAaggugaGCACGUc -3' miRNA: 3'- aaguaCGGCGGCGauGUCCU------CGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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